Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I17
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    30   1.2  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    28   4.9  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    28   4.9  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical
           protein T19B10.9 protein.
          Length = 588

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 229 PHP-ECLHPPSFQCSSDGEVGPQVVPEARLQLPTHTAQVEEASPQATPPP 83
           P P E   PP    S      P  VP +   +P + A ++++ P A PPP
Sbjct: 15  PGPGEACQPPMPASSFQNNGVPMTVPSSPQYIPANGAPLDQSGPIAPPPP 64


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 72  GSTVGGGVACGDASSTCAVCVGNCSRASGTTCGPTSPSEEHWKEGGCRHSGWG 230
           G   GGG  CG     C    G C    G   G   P       GGC   G G
Sbjct: 76  GGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGG 128



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 72  GSTVGGGVACGDASSTCAVCVGNCSRASGTTCG 170
           G   GGG  CG     C    G C    G  CG
Sbjct: 147 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 179


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
 Frame = +3

Query: 72  GSTVGGGVACGDASSTCAVCVGNCSRASGTTC-GPTSPSEEHWKEGGCRHSGWG 230
           G   GGG  CG     C    G C    G  C G +S        GGC   G G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGG 161


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
 Frame = +3

Query: 72  GSTVGGGVACGDASSTCAVCVGNCSRASGTTC-GPTSPSEEHWKEGGCRHSGWG 230
           G   GGG  CG     C    G C    G  C G +S        GGC   G G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGG 161


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +3

Query: 69  SGSTVGGGVACGDASSTCAVCVGNCSRASGTTCGP 173
           S    GGG   G     C  C GN    +G  CGP
Sbjct: 17  SAQCFGGGCGGGCFGGNCGGCSGNNCGCNGNNCGP 51


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -2

Query: 640 TTPELWAVAXPRSCTASPKPHRRLQRARCTYLIVAARPLPIPXTYRNK 497
           TTPE    + PRS +   +P +RL     T    AA   PIP     K
Sbjct: 63  TTPEAPTTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRK 110


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = -2

Query: 229 PHPECLHPPSFQCSSDGEV---GPQVVPEARLQLPTHTAQV--EEASPQA--TPPPTVDP 71
           P P    PP+     + +     P+  PEA  Q+P  TAQ+  E A P+A   P PT  P
Sbjct: 375 PPPPAPPPPAPAVPEEAQAPTPAPEEAPEA--QIPAETAQIPPENAVPEAPEEPAPTTTP 432


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = -2

Query: 229 PHPECLHPPSFQCSSDGEV---GPQVVPEARLQLPTHTAQV--EEASPQA--TPPPTVDP 71
           P P    PP+     + +     P+  PEA  Q+P  TAQ+  E A P+A   P PT  P
Sbjct: 387 PPPPAPPPPAPAVPEEAQAPTPAPEEAPEA--QIPAETAQIPPENAVPEAPEEPAPTTTP 444


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 512  YVPQQENEVYYPQQPENPIFSPTQATELADPTEKVE 405
            YVPQ+      P  PE    +P+Q   + +PT  +E
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 72   GSTVGGGVACGDASSTCAVCVGNCSRASGTTCGPTSPSEEH 194
            G   GGG +CG   ++   C G     S + C P + +  H
Sbjct: 2136 GGCSGGGNSCGGGCNSGGSCGGGGGGCSSSCCQPQTSATSH 2176


>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
            C47E8.8 protein.
          Length = 1675

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 157  PEARLQLPTHTAQVEEASPQATPPPTVDPDRTKN 56
            PEA++ L T T +  EAS    P P +D +  +N
Sbjct: 1047 PEAQIPLETRTLEPSEAS-SVQPEPPIDQEEAEN 1079


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 596 RQPEAAQAPSTGQVYIPDRRRQTLADTXYVPQQENEVYYPQQPEN 462
           +Q +    P     Y P R++Q      Y P+Q+ +  Y QQ +N
Sbjct: 39  QQQQQQGRPQQYAGYPPQRQQQQYNMNAYAPRQQQQQQYQQQQQN 83


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
            protein C47E8.8 protein.
          Length = 1675

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 157  PEARLQLPTHTAQVEEASPQATPPPTVDPDRTKN 56
            PEA++ L T T +  EAS    P P +D +  +N
Sbjct: 1047 PEAQIPLETRTLEPSEAS-SVQPEPPIDQEEAEN 1079


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 506 PQQENEVYYPQQPENPIFSPTQATELA 426
           PQQ+   Y PQQP +PI     A  +A
Sbjct: 6   PQQQQPGYQPQQPSHPIVGAGAAPTMA 32


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 226 HPECLHPPSFQCSSDGEVGPQVVPEARLQLPTHTAQVEEASPQATPPPTVDPDR 65
           HP    PP  Q +   E  P  +P+ +   P  TA    A+P AT  PT DP +
Sbjct: 217 HPPA--PPIRQAAHAAESSPPPIPQRKSSAPAPTA----AAPPATKEPT-DPKK 263


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 590 PEAAQAPSTGQVYIPDRRRQTLADTXYVPQQENEVYYPQQPENPIFSPT 444
           P++ QAPS          +Q  A T  +PQ     + P QP + I  PT
Sbjct: 121 PQSVQAPSATPAGPLQAMQQAPAPTPGIPQMNQGAHLPPQP-HQIHQPT 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,621,257
Number of Sequences: 27780
Number of extensions: 281314
Number of successful extensions: 1212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)