Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I14
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.8  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   3.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   7.1  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    25   9.4  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   9.4  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   9.4  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 338  HWLLK*CLLHNIERIFEV*SLW 273
            HW+L+ CL+H I++I+    LW
Sbjct: 2059 HWILRACLVHGIQQIWSA-ILW 2079


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 362 QVFIIYLQIYKYLQFNIDKQLTIL*SFLNFYIYNINNAKILFYYF 496
           Q  ++ L +  Y+QFN+  Q   L S  +F     NN  I + Y+
Sbjct: 209 QAMVLTLLLRNYIQFNLYDQADRLVSKTSFLTNASNNLAIRYQYY 253


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 18   SNNILRARXFFHCQSAQHPWSLSKSHIRKXVLSQ 119
            ++N+LR    FH Q++   W +  S +RK  + +
Sbjct: 1611 TSNLLRLAMGFHNQNSSSKWDVEISSLRKFCVKE 1644


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 512 LLELVIINIKNKKSVFIAILTNNNKIVEIQLFLSFVFFFDNHKT 643
           LL L   ++    SVFI IL +    +  ++  S VF+F   K+
Sbjct: 338 LLRLTEFDLSGATSVFIRILLDKKYALPYKVLDSLVFYFMRWKS 381


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 476 KILFYYFQKEYVLLELVIINIKNKKSVFIAILTNNNKIVEIQLFLSFVFFF 628
           +IL YY+++E V  E +II   +   +  +   +NN   +  L+L+ + FF
Sbjct: 67  EILRYYYEQEDVTYEEIIIQRNHAIELLRSASHDNN--TDAMLYLANIEFF 115


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 440 FLNFYIYNINNAKI 481
           FLN+YIYN N  KI
Sbjct: 430 FLNYYIYNYNCPKI 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,865
Number of Sequences: 5004
Number of extensions: 49009
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)