Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I13
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240...    28   5.6  
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559...    28   7.5  
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    28   7.5  

>06_01_0333 +
           2404459-2404857,2404917-2405009,2405428-2405522,
           2406146-2406219,2406307-2406395,2406745-2406858
          Length = 287

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 508 LGVPNSVLSAPNLVLTEKNSKEFIVNLSSFSYVCPHL 398
           L V N +L+    +       EF V +S+F+Y+ PHL
Sbjct: 220 LSVQNRLLNIDENIYIPITKGEFAVIVSTFNYIIPHL 256


>04_03_0129 -
           11554917-11555033,11555470-11555613,11555807-11555999,
           11556083-11556139,11556300-11556403,11556882-11556953,
           11557069-11557187,11557639-11557783,11558527-11558672,
           11558758-11558827,11559000-11559056,11559081-11559228,
           11559311-11559432,11559649-11559845,11560296-11560350,
           11560468-11560680,11561239-11561386,11561515-11561585,
           11563286-11563316,11563532-11563623,11565621-11565688,
           11567895-11568069
          Length = 847

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +3

Query: 405 GQTYENELRFTINSLEFFSVSTRL--GAERTLFGTPKPTFITYVLVR*TKSKKKYIESKL 578
           G  Y   L+  ++SLEF   ST    G+ R   G P+P  + YV +      KK+     
Sbjct: 523 GLGYYEFLQDILDSLEFARGSTNSTWGSLRVAMGHPEPFPVKYVTIGNEDCTKKFYHGNY 582

Query: 579 L-FENEIR 599
           L F   IR
Sbjct: 583 LKFHRAIR 590


>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 295 RKLKWNFRYCFKQYCEFYQVFFKISSLMNNI 387
           +KL  N   C K+YC  +++    + L NNI
Sbjct: 672 KKLDCNLAACLKRYCSEFRLLLTGTPLQNNI 702


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,623
Number of Sequences: 37544
Number of extensions: 212902
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)