Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I13
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    29   2.2  
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    29   2.2  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical
           protein F56E10.3 protein.
          Length = 475

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 274 FMKHFLFRKLKWNFRYCFKQYCEFYQVFFKISSLMNN 384
           F+K  +F  L WN  Y FK +  F+ +  ++ + + N
Sbjct: 7   FLKLAIFETLFWNLSYIFKHFQNFFGILTQLLATVKN 43


>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -2

Query: 380 FIKELILKKTW*NSQYCLKQ*RKFHFNLRNKK-----CFINLSNIPNKLKKVVNSFCVYV 216
           FI  +I+ KT   S    +Q R  +  L N+       F++ S  PN L  ++ SFC++V
Sbjct: 145 FILVIIIVKTQTFSWEAQEQLRLVNLFLNNEDEYLVFAFLSFSKWPNTLNLIITSFCIFV 204


>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
           protein ZK688.5b protein.
          Length = 1595

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 396 FRWGQTYENELRFTINSLEFFSVSTRLG 479
           FR  + +E  +R TIN++ F S STRLG
Sbjct: 223 FRPREHFEQVVRETINNISFLSDSTRLG 250


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
           protein ZK688.5a protein.
          Length = 1620

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 396 FRWGQTYENELRFTINSLEFFSVSTRLG 479
           FR  + +E  +R TIN++ F S STRLG
Sbjct: 223 FRPREHFEQVVRETINNISFLSDSTRLG 250


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 278 INLSNIPNKLKKVVNSFCVYVKYFLKQCTCTK 183
           ++LS++ NK  + + S  V VK++LK   C K
Sbjct: 322 LSLSHVVNKNIEDIQSLTVIVKFYLKTSECKK 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,770,191
Number of Sequences: 27780
Number of extensions: 241550
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)