Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_I12
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0153 + 14159820-14162417 30 1.1
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984... 30 1.5
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 29 3.4
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325... 28 4.5
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 28 4.5
02_02_0476 - 10751647-10753323 28 4.5
02_02_0310 - 8842286-8843314 28 4.5
08_02_0707 - 20212190-20214592 28 5.9
11_06_0144 - 20608382-20610277 27 7.8
07_03_1533 + 27523811-27524710 27 7.8
>11_04_0153 + 14159820-14162417
Length = 865
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 445 RVGGRIPVTPSESFQKRISGASEKDIVHSGL 353
R+GG I P ESFQ+R ++ D+ G+
Sbjct: 309 RIGGTIGYLPPESFQRRAMATAKSDVFSFGI 339
>07_03_0739 -
21096684-21096742,21096822-21097076,21097206-21098498,
21098616-21098688
Length = 559
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = -1
Query: 538 VSYGRLTFKYERESNYHLLESVQESLERR-FGRVGGRIPVTPSESFQKRISGASEKDIVH 362
V+Y L F E ++ Y+ + V S ER + GGR+P+ SE SG +
Sbjct: 237 VTYYSL-FDAELDAVYYAINKVSGSNERASLAQAGGRVPIRVSE------SGHPSGGRIR 289
Query: 361 SGL-DYTMERSARAIMKTAMRFNLGLDLRTAAYANSIEKI 245
SG+ + + + A A +N GL R A+++E +
Sbjct: 290 SGVTEANADGDSVATKANAQAYNNGLAKRVLFGASNMEDV 329
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +2
Query: 293 EVEPHGCLHDGPSGSLHGVVESGVHDVLLGGAGDS 397
E + H L DG SL V+ GVHDV LG DS
Sbjct: 999 EEDDHEVLQDG---SLPICVQDGVHDVKLGDTDDS 1030
>07_03_1144 +
24331104-24331292,24331387-24331611,24332133-24332521,
24332762-24332856,24333300-24333673
Length = 423
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +2
Query: 191 YSVSELLE----S*TGIGIRGEYLFDGVRIRGCPQI*TEVEP-HGCLHDGPSGS 337
Y V E LE S G R + DG R+R C + T EP G +H S S
Sbjct: 292 YGVEETLEAHSDSTAGFTDRHQKRSDGGRVRACAAVATGAEPVQGVVHSSSSSS 345
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 360 PDSTTPWRDPLGPS*RQP 307
P +TPWRDP S RQP
Sbjct: 10 PHDSTPWRDPSRASSRQP 27
>02_02_0476 - 10751647-10753323
Length = 558
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 365 HDVLLGGAGDSLLEGL*GSDGDAASHATEPPL 460
H+V+ G G L+ G AA+ ATEPP+
Sbjct: 313 HEVMFTGLGGGLVVSDNGEHASAAAPATEPPV 344
>02_02_0310 - 8842286-8843314
Length = 342
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = -3
Query: 401 EENLRRLREGHRALRTR-LHHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHH 237
E+ + RL G R+ HH + ED HE R+ HR+ HH
Sbjct: 174 EDEMARLHHGRRSHHHHHRHHHHHHDENEEDEHEQADEASPAVERLISFHRRRHHH 229
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 347 HHGEIR*GHHEDSHEVQPRFRSEDSRVCELHRKDIHHVC 231
HHG+ HH D H S + + E K+ H C
Sbjct: 542 HHGDANKSHHHDHHHDSSNEESHHNSLTENSCKENHSHC 580
>11_06_0144 - 20608382-20610277
Length = 631
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 484 LESVQESLERRFGRVGGRIPVTPSESFQKRISGASEKDIVHSGL 353
L + +L G GG IPV P E ++ +IS + D H+G+
Sbjct: 188 LRLTKATLSSGDGDSGGVIPVLPIEKYRPQISAPAWIDDDHAGV 231
>07_03_1533 + 27523811-27524710
Length = 299
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 431 HPRHSLRVLPEENLRRLREGHRALRTRLHHGEIR*GHHEDS 309
H R S V+ RR R R R HH +R G +DS
Sbjct: 160 HTRGSGGVVVRRRHRRRRRSRRRRRRHRHHPGVREGEDDDS 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,072
Number of Sequences: 37544
Number of extensions: 316414
Number of successful extensions: 779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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