Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_I11
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 206 1e-54
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 27 1.4
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 1.8
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 2.4
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 26 3.2
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 4.3
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 7.4
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 24 9.8
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 24 9.8
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 24 9.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 24 9.8
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 206 bits (504), Expect = 1e-54
Identities = 97/127 (76%), Positives = 110/127 (86%)
Frame = -1
Query: 392 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 213
MGRMH+ GKGI+ SALPY RS P W K AD V EQI K KKG++PSQIGV LRDSHG+
Sbjct: 1 MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60
Query: 212 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 33
QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61 PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120
Query: 32 RIHRLAR 12
RIHRLAR
Sbjct: 121 RIHRLAR 127
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 1.4
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = -1
Query: 308 TADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL--PE 135
++DD Q + L QIG+ L D G A V T + L D+ PE
Sbjct: 66 SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121
Query: 134 DLYYLIKKAVAMRKHLE 84
+ L K + +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 1.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 188 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESR 30
KKI+ I L D YYL KKA + + N +K+SK I +E +
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKK 234
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 2.4
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +3
Query: 261 TLLSKFVNLFLYIVGSQFQPGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNR 416
TL+SK FL+ Q Q AV QR D L SV + V +LNR
Sbjct: 145 TLVSKVHPNFLFDSDVQSQHITRDEAVNQRLQDDPLVSSVGSLQVFSDMLNR 196
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 95 KHLERNRKDKDSKFRLILVESRIHRLAR 12
K+ R +K+ D ++ +LVESR+H L R
Sbjct: 32 KYQWREQKESD-EYDYVLVESRLHELRR 58
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = -1
Query: 191 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 66
G+ + ++ A + PE+L+ +KK+ + +K + K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 7.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 360 LPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFT 220
+P G PP P ++ R+ Q W+ S++NW N +G+T
Sbjct: 222 VPRGPPSPP--PPVLHSPPRKVSAQEQQDWQIPP-SISNWKNPKGYT 265
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.2 bits (50), Expect = 9.8
Identities = 10/53 (18%), Positives = 27/53 (50%)
Frame = -1
Query: 383 MHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 225
++ GK A+ + + + A ++++ IYK G+ G+T + + ++ +
Sbjct: 33 LNGSGKSNILDAICFVLGITNMSTVRAQNLQDLIYKRGQAGITRASVTIVFNN 85
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.2 bits (50), Expect = 9.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -1
Query: 359 SQSALPYRRSVPTWLKLTADDVKEQIYK 276
SQ P + + TW+ ++++D +YK
Sbjct: 616 SQYRYPILKCIQTWIFISSNDTIHSVYK 643
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -1
Query: 182 ILRIMKAMGLAPDLPEDLYYLIKKAVA 102
I R+ +++ + P+LP+D+ L+ K+ A
Sbjct: 469 IRRLRESISIIPNLPKDIQKLVIKSYA 495
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.2 bits (50), Expect = 9.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 179 LRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 57
LR+ K +G+ D K+ A ++ R+RK+KDSK
Sbjct: 1279 LRVQKELGILKT-ERDTSTNRKQGQASKQPQRRHRKEKDSK 1318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,697
Number of Sequences: 5004
Number of extensions: 37011
Number of successful extensions: 96
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -