Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I11
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   205   1e-53
Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    27   4.9  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    27   8.6  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  205 bits (501), Expect = 1e-53
 Identities = 94/130 (72%), Positives = 116/130 (89%)
 Frame = -1

Query: 392 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 213
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 212 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 33
            QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61  GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120

Query: 32  RIHRLARDXK 3
           RIHRLAR  K
Sbjct: 121 RIHRLARYYK 130


>Z82267-4|CAB05192.1|  285|Caenorhabditis elegans Hypothetical
           protein F38C2.6 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 363 YLPVGAALPPQ-CP-YLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKI 199
           YL V A LP   CP +  E D +R      QTWK G+   T  C A    +S P  I
Sbjct: 93  YLAVKADLPNNTCPAFPFETDIKR---PGNQTWKSGNGWTTRLCKAGWTLFSRPDSI 146


>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 285 NLQTWKEGSHSLTNWCNAEGFTW 217
           N++TW +    LTN  NA G  W
Sbjct: 467 NIETWDKAEADLTNALNASGRKW 489


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 285 NLQTWKEGSHSLTNWCNAEGFTW 217
           N++TW +    LTN  NA G  W
Sbjct: 508 NIETWDKAEADLTNALNASGRKW 530


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 321 LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKD 181
           +V   C  C  T L   + G+H L+    A G++  CP  I N + +
Sbjct: 91  IVSFTCPYCNITGLTERQFGTHVLSQHPEAPGYSVICPLCIGNTEME 137


>U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical
           protein C43E11.11 protein.
          Length = 656

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -1

Query: 446 LVSLVVVVRSAI**KAANMGRMHAPGKGISQSALPYRRSVPTWL 315
           L ++V+ V+++I    A + RMH   +G+++S  PY + + T++
Sbjct: 443 LDAIVIEVKNSI---RAIVARMHVETRGMTKSVAPYMQELLTYI 483


>Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical
           protein Y48E1B.8 protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 327 PYLVEIDCRRCKGTNL-QTWKEGSHSLT--NWCNAEGFTWSCPSKIRN 193
           PYL+++DC    GT L Q  + G H +     CN E  + S  S++ N
Sbjct: 283 PYLLQLDCETNGGTKLMQLGRYGFHFVNPDGTCNNEKIS-SAKSRMEN 329


>Z82093-2|CAB05019.1|  213|Caenorhabditis elegans Hypothetical
           protein ZK39.3 protein.
          Length = 213

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 297 CKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDP 178
           C  TN  TW +GS S T      GF W       +++K P
Sbjct: 125 CTATNSFTWTDGSTSGT-----AGFVWDSRQPDNDYKKQP 159


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 137 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 12
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 137 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 12
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 161 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 15
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 161 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 15
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 137 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 12
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 168 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,384,954
Number of Sequences: 27780
Number of extensions: 211935
Number of successful extensions: 480
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)