Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_I10
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 84 2e-17
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 27 1.9
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 3.3
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 5.7
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 26 5.7
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.6
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 7.6
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 7.6
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 7.6
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/71 (52%), Positives = 51/71 (71%)
Frame = -3
Query: 659 LLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVR 480
LL+ L H+++ + D LAVAC+D+G Y+R YP G+ +I + G KQR+M L+SH DP VR
Sbjct: 369 LLKKLFHIVQYNEDNTSLAVACHDLGAYIRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVR 428
Query: 479 YEALLAVQKLM 447
+EAL VQ LM
Sbjct: 429 FEALSTVQLLM 439
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -3
Query: 656 LRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSH 498
LR +HLL+ S+ ++ A + + P + EQ+ G Q++ + H
Sbjct: 118 LRLFIHLLQPSQPSMLQVAAMKTLVCIMADRPLAIRLFEQINGLQQICVVFKH 170
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -3
Query: 644 VHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVR--YEA 471
++L + D +L AC + Y P ++++ GGK + LL N R +
Sbjct: 65 IYLSTPAFDKTILTSACITVRSYYPSQPPIVQLLDEKGGKHKYTSLLLQLWKNERSVFNI 124
Query: 470 LLAVQKLMVHNWE 432
VQ L+ ++E
Sbjct: 125 YRLVQALIKQDFE 137
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 438 VVNHKFLHGEQGFVPYIRIVVTQEVHDTLFTTK-LFDDVFAARIVAHIFSDVIASD 602
VV ++H + F+ I+ +TQ ++ + T+K LF V ++I +++A D
Sbjct: 317 VVKELYVHVSRRFMLRIKAAITQMIYKKVLTSKTLFVAVDGSKINLDYVYNLLAKD 372
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 5.7
Identities = 22/83 (26%), Positives = 30/83 (36%)
Frame = -3
Query: 647 LVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEAL 468
LV LL S + A +G V II G LLSH N+R EA
Sbjct: 295 LVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEAC 353
Query: 467 LAVQKLMVHNWEYLGKQLEKEQI 399
+ + N + + +E I
Sbjct: 354 WTISNITAGNTQQIQAIIESNLI 376
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 316 KLYIFLIYNVMSYKFYALAPTTVPACLSICS 408
K YI+L+ ++ +APT V C S C+
Sbjct: 1079 KAYIYLLQYTIAVCKPTIAPTNVACCCSKCN 1109
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 261 MLLWFIKLNQT*KVDCLIKNTSIEVNIV 178
+ LW I L Q DCL+ N S+ V+++
Sbjct: 369 LYLWSIDLEQISPSDCLLDNYSLFVDLL 396
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 662 ELLRTLVHLLEKSRDPVVLAVAC 594
E++ ++ L+EKS++P +L AC
Sbjct: 203 EVVSEILELIEKSKNPSILVDAC 225
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 148 ISEWLTLKVKYNIYFN*CVFNQAIYFLCLIK 240
+S +LTLK K IYF C+ N Y+ C ++
Sbjct: 541 VSFFLTLKGKKFIYFRICITN---YYRCNVR 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,848
Number of Sequences: 5004
Number of extensions: 52146
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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