Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I08
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...   139   3e-34
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.7  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   6.3  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.3  

>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score =  139 bits (337), Expect = 3e-34
 Identities = 76/181 (41%), Positives = 117/181 (64%), Gaps = 18/181 (9%)
 Frame = -2

Query: 628 VRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 449
           +++++ RQ + Q+L+  +++SSA M +K L  VT  ESP+VVVLS SMEP+F RGDLLFL
Sbjct: 1   MQKLSFRQGLAQILNLLLVLSSAYMGYKTLSFVTDCESPVVVVLSESMEPSFQRGDLLFL 60

Query: 448 TN----YPE-------------EPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNGTVKFL 320
            N    + E              PV +G+IVV+ +  R IPIVHRV+KL+E  N T   +
Sbjct: 61  DNRNPSFDEAKVPSVFEKIIYGSPVGIGDIVVYSLPDRPIPIVHRVVKLYESENQT-HLI 119

Query: 319 TKGDNNSVDDRGLYAQGQLWLTKKD-VVGRARGFLPYVGMVTIYMNEYPKFKFAVLAWLA 143
           TKGDNN +DD  ++ +   +L +++ ++G  RG+ PY+GM+TI++ +YP  K+ +L  L 
Sbjct: 120 TKGDNNKIDDVAMFPKSINYLDRENHILGVVRGYFPYLGMITIWLTDYPILKYIMLGGLG 179

Query: 142 I 140
           +
Sbjct: 180 L 180


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -2

Query: 412  IVVFKVEGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSVDDRGLYA-QGQLWLTKKDVVG 236
            +V+F ++    PI+  + KL  + +  V+    G+ N   +R     +G +   +K++  
Sbjct: 1049 MVIFYLQQIPEPILPNLQKLSTQYSKIVRDNDYGNVNCWFNRDTECYRGSMQKGRKNIAL 1108

Query: 235  RARGFLPYVGMVTIYMNEYPKF 170
              RGF  Y G+ T Y  ++  +
Sbjct: 1109 LLRGFFCYYGLTTQYSFDWEAY 1130


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 303 IALMTEACMPRANCGSLKKMWLAVQEDFCHMLEWS 199
           ++L+  AC  R +  ++   W    E F ++L W+
Sbjct: 164 LSLLINACKDRLSSSAISLQWKKTLECFTNLLGWN 198


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 463 DLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVHRV 362
           DLL   N PE P+ + ++ V K+E  DI +V  V
Sbjct: 61  DLLAKINDPEHPLTLAQLSVVKLE--DIEVVDNV 92


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 90  NTSVSSRFCHSLCPHXXIASQASTA--NLNLGYSFIYMVTIPTYGKNPLARPTTSFLVSH 263
           NT  S    ++  P     S+ + A  N N GYS++   + P    NPL    T+ L + 
Sbjct: 77  NTDYSQTSSYASTPMSNAYSRDAPAAINNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNA 136

Query: 264 SWPWA 278
             P A
Sbjct: 137 GIPAA 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,569
Number of Sequences: 5004
Number of extensions: 56510
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)