Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_I08
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1125 - 9268507-9268557,9268771-9268828,9268920-9269007,926... 196 2e-50
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473... 187 7e-48
02_05_1306 - 35595177-35595218,35595591-35595636,35595687-355957... 107 9e-24
03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865 65 5e-11
02_02_0275 + 8478374-8478706 31 1.2
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251... 30 1.6
04_04_1021 + 30190403-30190450,30191245-30192924 29 4.9
01_06_1703 + 39301075-39301829,39302735-39303560 29 4.9
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 28 6.5
03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546... 28 6.5
02_05_0243 - 27124559-27124864,27126922-27126990,27127741-271279... 28 6.5
03_02_0226 - 6569657-6570388,6570461-6570748,6570846-6571303,657... 28 8.6
>06_01_1125 -
9268507-9268557,9268771-9268828,9268920-9269007,
9269162-9269207,9269304-9269339,9269438-9269509,
9269946-9270058,9271626-9271740,9273728-9273772
Length = 207
Score = 196 bits (477), Expect = 2e-50
Identities = 95/148 (64%), Positives = 117/148 (79%), Gaps = 1/148 (0%)
Frame = -2
Query: 580 GMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVF 401
GMIV+SAL+IWKGL+VVTGSESP+VVVLSGSMEP F RGD+LFL + ++P+R GEIVVF
Sbjct: 54 GMIVTSALIIWKGLIVVTGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRTGEIVVF 112
Query: 400 KVEGRDIPIVHRVLKLHEK-NNGTVKFLTKGDNNSVDDRGLYAQGQLWLTKKDVVGRARG 224
V+GR+IPIVHRV+K+HE+ + V LTKGDNN DDR LYA GQLWL + ++GRA G
Sbjct: 113 NVDGREIPIVHRVIKVHERQESAEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVG 172
Query: 223 FLPYVGMVTIYMNEYPKFKFAVLAWLAI 140
FLPYVG VTI M E P K+ ++ L +
Sbjct: 173 FLPYVGWVTIIMTEKPIIKYLLIGALGL 200
>05_03_0370 +
13144612-13144639,13144749-13145260,13146995-13147327,
13147690-13147699,13149704-13149816,13151187-13151258,
13151397-13151432,13151552-13151597,13151726-13151828,
13151916-13151973,13152231-13152281
Length = 453
Score = 187 bits (456), Expect = 7e-48
Identities = 94/153 (61%), Positives = 116/153 (75%), Gaps = 6/153 (3%)
Frame = -2
Query: 580 GMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVF 401
GMIV+SAL+IWKGLMV TGSESP+VVVLSGSMEP F RGD+LFL + ++P+R GEIVVF
Sbjct: 295 GMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRTGEIVVF 353
Query: 400 KVEGRDIPIVHRVLKLHEK-NNGTVKFLTK-----GDNNSVDDRGLYAQGQLWLTKKDVV 239
++GR+IPIVHRV+K+HE+ + V LTK GDNN DDR LYA GQLWL + ++
Sbjct: 354 NIDGREIPIVHRVIKVHEREESAEVDILTKVNCFSGDNNFGDDRLLYAHGQLWLHQHHIM 413
Query: 238 GRARGFLPYVGMVTIYMNEYPKFKFAVLAWLAI 140
GRA GFLPYVG VTI M E P K+ ++ L +
Sbjct: 414 GRAVGFLPYVGWVTIIMTEKPFIKYLLIGALGL 446
>02_05_1306 -
35595177-35595218,35595591-35595636,35595687-35595778,
35595945-35596013,35596153-35596265,35596503-35596542
Length = 133
Score = 107 bits (257), Expect = 9e-24
Identities = 51/89 (57%), Positives = 70/89 (78%)
Frame = -2
Query: 619 MNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNY 440
M R + +++ GM++SSALMIWKGL+++TGSESP+VVVLS SME F RGD+LFL
Sbjct: 1 MQIRHALVHLITLGMVISSALMIWKGLIIMTGSESPLVVVLSESMELGFERGDILFL-QM 59
Query: 439 PEEPVRVGEIVVFKVEGRDIPIVHRVLKL 353
+ P+R G+IVVF +GR+IPIVHRV+++
Sbjct: 60 SKHPIRTGDIVVFN-DGREIPIVHRVIEV 87
>03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865
Length = 648
Score = 65.3 bits (152), Expect = 5e-11
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Frame = -2
Query: 541 LMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYP-----EEPVRVGEIVVFKVEGRDIP 377
L++ + + VV+SGSMEP RGD+L + ++ +R G+IV+F E +P
Sbjct: 43 LLLGKATGTTATVVVSGSMEPGIRRGDMLIVRERRNDGDGDDNIRAGDIVLFSTELHPVP 102
Query: 376 IVHRVLKLHEKNNGTVK-FLTKGDN 305
IVHRV++LHE+++G + LTKG N
Sbjct: 103 IVHRVIELHERHDGGARQMLTKGAN 127
>02_02_0275 + 8478374-8478706
Length = 110
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 577 MIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFH 470
+I S L + L++VTGS SP+ V +SG P H
Sbjct: 3 LITLSCLCLCLLLLLVTGSSSPVSVSVSGDRCPVLH 38
>07_01_0347 -
2509229-2509487,2509682-2509922,2510292-2510511,
2510943-2511278,2512047-2512103,2512187-2512210
Length = 378
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 244 VVGRARGFLPYVGMVT-IYMNEYPKFKFAVLAWL 146
++ G PY G + ++M + P FKF LAWL
Sbjct: 232 MIATGTGVAPYRGYLRRMFMEDVPSFKFGGLAWL 265
>04_04_1021 + 30190403-30190450,30191245-30192924
Length = 575
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 646 ESLFDDVRRMNKRQFMYQVLSFGMIVSSALMIW 548
++ D R+M+ + Y + FGMIVS ++W
Sbjct: 185 DNAVDRERKMSFFSWFYMCVDFGMIVSGLFIVW 217
>01_06_1703 + 39301075-39301829,39302735-39303560
Length = 526
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Frame = -2
Query: 604 FMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPE--E 431
+ Y L+FG +V +++W V G + + S F G + P
Sbjct: 140 WFYLSLNFGSLVGGTVLVWVQTSVGWGIGYGVPAIFSALSVAVFLAGTAAYRRCQPPGGS 199
Query: 430 PV-RVGEIVVFKVEGRDIPIVHRVLKLHE 347
P+ R+ ++VV D+ + LHE
Sbjct: 200 PLTRIAQVVVAAARKHDVEVPADASLLHE 228
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 144 ASQASTANLNLGYSFIYMVTIPTYGKNPLARPTTSF 251
+S ST+ N G S + TIPT+G P +++F
Sbjct: 317 SSGMSTSAFNFGSSPSFGQTIPTFGSTPFGTTSSTF 352
>03_06_0206 -
32353308-32353566,32353784-32354024,32354408-32354627,
32354981-32355316,32355632-32355688,32355787-32355810
Length = 378
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 244 VVGRARGFLPYVGMVT-IYMNEYPKFKFAVLAWL 146
++ G P+ G + ++M + PK++F LAWL
Sbjct: 232 MIATGTGVAPFRGYLRRMFMEDVPKYRFGGLAWL 265
>02_05_0243 -
27124559-27124864,27126922-27126990,27127741-27127926,
27128572-27129093
Length = 360
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 433 EPVRVGEIVVFKVEGRDIPIVHRVLKLHEK-NNG 335
+P R G +V V G+ +P+ +LH K NNG
Sbjct: 265 QPRRSGRVVTVSVVGKQVPLYGAGAELHSKPNNG 298
>03_02_0226 -
6569657-6570388,6570461-6570748,6570846-6571303,
6571694-6571828,6571829-6572084,6572229-6572451,
6572533-6572661,6573570-6573775
Length = 808
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +3
Query: 480 GSILPD-----STTTIGLSLPVTTIKPFHIIKAEDTII 578
GS PD S +G+S PV++ K H+ KAED I
Sbjct: 18 GSSAPDVEQQKSVAAVGVSSPVSSSKHHHMAKAEDGTI 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,778,343
Number of Sequences: 37544
Number of extensions: 348913
Number of successful extensions: 875
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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