Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_I01
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.7  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 649 VNHEGIPIKSSLDNATSVLYAGLIGQ 572
           + H+G PI+  +   T ++ AG++G+
Sbjct: 574 LTHKGKPIRMRIGIHTGMVLAGVVGK 599


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 483 ISCLRLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVALSN 617
           I+C    T  N N+F+      T + F     I  + NT   LS+
Sbjct: 321 IACWDTNTELNPNTFILVAENNTTMVFCNDLSIDRSTNTMYVLSD 365


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = -3

Query: 771 FVYELSVVENFSFEAHT*WPPRSKKRSRGSKPTKG*WVSSS*TTKVYQ----SKAH*IMP 604
           FV+  + +  ++   +T W  R+KK+S+  +      +SS   +K       S    I+ 
Sbjct: 312 FVFVFAALLEYAAVNYTYWGARAKKKSKKKESDDKKVISSKSGSKANSPFPGSTEADIIE 371

Query: 603 LQCYMLGLLDSLLRRPGMWFVKWTP 529
           LQ   +  L S+  R G+     TP
Sbjct: 372 LQDLRMSPLPSIRNRSGLVSGSSTP 396


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -3

Query: 552 MWFVKWTPQM 523
           +WF+ WTP +
Sbjct: 286 LWFMAWTPYL 295


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 366 KTI*NNFNYKLTY 404
           KTI NN NYK  Y
Sbjct: 88  KTIHNNNNYKYNY 100


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 366 KTI*NNFNYKLTY 404
           KTI NN NYK  Y
Sbjct: 88  KTIHNNNNYKYNY 100


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 366 KTI*NNFNYKLTY 404
           KTI NN NYK  Y
Sbjct: 88  KTIHNNNNYKYNY 100


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 366 KTI*NNFNYKLTY 404
           KTI NN NYK  Y
Sbjct: 88  KTIHNNNNYKYNY 100


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 366 KTI*NNFNYKLTY 404
           KTI NN NYK  Y
Sbjct: 88  KTIHNNNNYKYNY 100


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 366 KTI*NNFNYKLTY 404
           KTI NN NYK  Y
Sbjct: 321 KTIHNNNNYKYNY 333


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -3

Query: 552 MWFVKWTPQM 523
           +WF+ WTP +
Sbjct: 36  LWFMAWTPYL 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,369
Number of Sequences: 438
Number of extensions: 5121
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)