Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H24
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1288 + 25902264-25902431,25902506-25903090                       35   0.054
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    30   2.0  
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100...    29   2.7  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     28   8.3  
06_03_0259 - 18851809-18852561,18852659-18852895                       28   8.3  

>08_02_1288 + 25902264-25902431,25902506-25903090
          Length = 250

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = -2

Query: 295 VWIWNVCVRLPLGALFQLHTATVTA*K*FLIMSTVRENRSKYFIYLSK*RKVFCSTILNR 116
           VW+W+V  R PL +   ++TAT    +   ++  +++N  K  + +   R V   + L  
Sbjct: 25  VWLWHVVRRRPLSSTVGINTAT----RRLWVLGMMKDNEKKAVLVVQSMRNVIMGSTLMA 80

Query: 115 FTV----SWRPAXIXDXXALKEELSXEMNGLHGE 26
            T     +   A +     +K+ LS  + G HGE
Sbjct: 81  TTAILFCTGVAAILSSTYTVKKPLSDAVFGAHGE 114


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 126  IVLQNTFLYLDKYIKYLLRFSRTVDIIKNHFHAVTVAVCSWKSA 257
            I + N  L ++++ +YLL     V   K  FHA+ +A+C W+ A
Sbjct: 1182 IEVDNVTLLVEQFFEYLLNNHVVVQEPKYIFHALNIALC-WRVA 1224


>01_06_0004 +
           25507739-25508206,25509346-25509477,25509910-25510086,
           25510175-25510219,25510305-25510512,25510766-25510825,
           25510826-25511016,25511219-25511614
          Length = 558

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -3

Query: 594 PLVGSGLALPLALLKSMGDGNHSPSGGPYARLPRKAIKKKLPFGA 460
           P+ GSG A P +   S G GN  PS  P    P+ A+   + FGA
Sbjct: 103 PVNGSGHASPKSPTPSCGKGNQPPS-RPTPTSPQGAVFNVVDFGA 146


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = -3

Query: 585 GSGLALPLALLKSMGDGNHSPSGGPYARLPR 493
           GS LA  L LL  M      PSG  YARL R
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARLIR 94


>06_03_0259 - 18851809-18852561,18852659-18852895
          Length = 329

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 582 SGLALPLALLKSMGDGNHSPSGGPYA-RLPRKAIKKKLP 469
           + L+L LA+L S G+G+H P   P A  L  K  +K  P
Sbjct: 10  ASLSLLLAVLASTGEGSHQPVVMPVAMELSAKYYRKTCP 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,317,444
Number of Sequences: 37544
Number of extensions: 345632
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)