Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_H21
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 56 3e-08
12_02_0891 + 24065001-24065101,24065260-24065345,24065902-240659... 51 7e-07
03_05_0548 + 25439649-25439734,25440712-25440799,25441160-254412... 39 0.004
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365... 31 1.1
04_04_1687 - 35365766-35366356,35367137-35368135 29 2.6
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 29 3.4
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272 29 4.5
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 7.8
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = -2
Query: 291 LQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATAL 148
LQN V+TV+L C L L I + R +EYNP RF V+M+I DP+ TAL
Sbjct: 47 LQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTAL 94
>12_02_0891 +
24065001-24065101,24065260-24065345,24065902-24065965,
24066137-24066224,24066810-24066881,24067821-24067871,
24067940-24067984,24068086-24068178,24068265-24068366,
24068442-24068515,24068540-24068579
Length = 271
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = -2
Query: 288 QNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMKILDPRATAL 148
+N V+TV+L C+L L I + R +EYNP RF V+M+I +P+ TAL
Sbjct: 84 KNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTAL 130
>03_05_0548 +
25439649-25439734,25440712-25440799,25441160-25441204,
25441407-25441478,25442402-25442452,25442527-25442571,
25442670-25442762,25442848-25442949,25443024-25443097,
25443130-25443160
Length = 228
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 15/63 (23%)
Frame = -2
Query: 291 LQNCVATVSLGCELKLLDIYCRTRYSEYNP---------------ARFQGVVMKILDPRA 157
LQN V+TV+L C+L L I + R +EYNP RF V+M+I +P+
Sbjct: 28 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKTQHEVLGDFVTICNIRFAAVIMRIREPKT 87
Query: 156 TAL 148
TAL
Sbjct: 88 TAL 90
>10_08_0914 +
21535519-21535797,21535961-21536339,21536425-21536568,
21536681-21536730,21536820-21536877,21536979-21537208
Length = 379
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = -2
Query: 564 EVSQENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNS 385
E++ +E + E + + P+TP++ + VS + +S + NG + +
Sbjct: 11 EIADTFGIEMDEEEAAAAAIPPPQTPLEPMEYLSRSWSVSASEISKILFNG--SKKSFAA 68
Query: 384 SFTPQPLNPHNSMTALTPMPS 322
P+ P NS+ A + +PS
Sbjct: 69 KRLPEMTIPENSVVAASIVPS 89
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = -2
Query: 450 VSGTNLSSQVVNGDVALTPTNSSFTPQPLNP-------HNSMTALTPMPSAST 313
+S N+S+ V NGD L P PQP P HN+ A +PS+ST
Sbjct: 369 ISNNNISAPVCNGDSLLVPP-ILMHPQPQPPADIQGARHNNGHAYADIPSSST 420
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 119 AAXXGAGRRXAERVEGDRXEDGAEXHRKKNEDE 21
AA R+ AE E R + AE RKK E+E
Sbjct: 201 AAAGAEARKKAEEAEAKRKAEEAEARRKKEEEE 233
>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
Length = 786
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 513 EMYSTPKTPIKAQNFSKEDAG-VSGTNLSSQVVNGDVALTPTNSSF 379
E+YSTPKTP+ ++ S ED G V+ + L ++ G P F
Sbjct: 637 ELYSTPKTPV--EHKSNEDHGSVAASLLQTKPRRGRARKRPQKKDF 680
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 399 TPTNSSFTPQPLNPHNSMTALTPMPSAST 313
TP N + TP PL P+ + + P P ST
Sbjct: 35 TPPNPATTPTPLTPNPNPSPTLPPPPMST 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,273
Number of Sequences: 37544
Number of extensions: 250247
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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