Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_H21
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding pr... 56 2e-08
L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box bindin... 56 2e-08
AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription... 56 2e-08
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 38 0.007
AC103567-5|AAL35728.2| 337|Caenorhabditis elegans Hypothetical ... 33 0.25
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 31 0.57
Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical p... 30 1.7
Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical p... 30 1.7
Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear recep... 30 1.7
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 30 1.7
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 29 2.3
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 2.3
AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical ... 29 2.3
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 29 3.0
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 29 3.0
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical pr... 27 9.2
>U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding
protein protein 1 protein.
Length = 340
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/69 (43%), Positives = 38/69 (55%)
Frame = -2
Query: 354 NSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMK 175
N + P AS LQN V+TV+LG +L L I R +EYNP RF V+M+
Sbjct: 147 NIAATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMR 206
Query: 174 ILDPRATAL 148
I +PR TAL
Sbjct: 207 IREPRTTAL 215
>L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box binding
protein protein.
Length = 340
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/69 (43%), Positives = 38/69 (55%)
Frame = -2
Query: 354 NSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMK 175
N + P AS LQN V+TV+LG +L L I R +EYNP RF V+M+
Sbjct: 147 NIAATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMR 206
Query: 174 ILDPRATAL 148
I +PR TAL
Sbjct: 207 IREPRTTAL 215
>AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription
factor TFIID protein.
Length = 340
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/69 (43%), Positives = 38/69 (55%)
Frame = -2
Query: 354 NSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSEYNPARFQGVVMK 175
N + P AS LQN V+TV+LG +L L I R +EYNP RF V+M+
Sbjct: 147 NIAATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMR 206
Query: 174 ILDPRATAL 148
I +PR TAL
Sbjct: 207 IREPRTTAL 215
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/79 (30%), Positives = 41/79 (51%)
Frame = -2
Query: 534 EHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPH 355
E S S + S+ P +QN + + SG+++ +Q + +P SS TP P +P
Sbjct: 834 EASTSGSSVASSSPAPSTSQNPNPSTS--SGSSMITQSPYPSQSTSPVESSTTPSPGSPG 891
Query: 354 NSMTALTPMPSASTQAKSS 298
++T+ +P PS ST S+
Sbjct: 892 TTLTSTSPSPSQSTTIGST 910
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = -2
Query: 507 YSTPKTPIKAQNFSKEDAGVSGTNLS-SQVVNGDVALTPTNSSF--TPQPLNPHNSMTAL 337
+ + +TP + + + VSG+N S S V G + + SSF +P ++P + + +
Sbjct: 1297 HGSTQTPSTIGSTVTQPSTVSGSNSSGSTVTIGSSEASTSGSSFKTSPSSISPVPTSSPI 1356
Query: 336 TPMPSASTQAKSSIKLQNCVATVSL 262
AS+ + S+I + V+T SL
Sbjct: 1357 PSTTFASSTSGSTISDVSSVSTTSL 1381
>AC103567-5|AAL35728.2| 337|Caenorhabditis elegans Hypothetical
protein Y51F10.10 protein.
Length = 337
Score = 32.7 bits (71), Expect = 0.25
Identities = 27/118 (22%), Positives = 53/118 (44%)
Frame = -2
Query: 564 EVSQENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNS 385
E + +K++E + + ST T + +++G T+ S Q V+G + N
Sbjct: 50 ETRAREQFDKQNEPIVLDSTSTKTTTTASPPGGNKNSGEVRTSESRQSVSGYDDVLSQNV 109
Query: 384 SFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATVSLGCELKLLDIYCRTRYSE 211
P P+N + SMT+ + PS S + L +T ++ ++++L + R E
Sbjct: 110 -LVPCPVNSNPSMTSSSTKPSVSNTSAMVHSLHEFESTNNVFDDIQILALDDRKALQE 166
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 31.5 bits (68), Expect = 0.57
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -2
Query: 564 EVSQENRVEKEHEGSI-SEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTN 388
E +QE R + EH GS+ SE+ + +TP + + D G S +L N P +
Sbjct: 158 EENQEGRQDLEHRGSVDSELSALTQTPSQTPADTPSDVGESFEDLLVLEDNFQQP-RPKS 216
Query: 387 SSFTPQPLNPHNSMTALTPMPSASTQAKSS 298
PQ +PH+ + S + K+S
Sbjct: 217 VVLFPQLPDPHDDHNNTMSLKLRSAEKKNS 246
>Z68222-9|CAE46689.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.7
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Frame = -2
Query: 555 QENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALTPTNSSF 379
++N + +EGS S Y T TPI + S S N + Q + G V + SF
Sbjct: 229 KKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV-----SRSF 283
Query: 378 TPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--DIYCRTR 220
+ + NS+ + SA+ + I L+ + C+ + D CR
Sbjct: 284 SENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFDQLCRVD 343
Query: 219 YSEYNPARFQGVVMKILDPRATAL 148
+ R GVV K PR AL
Sbjct: 344 VTIEAAFRQPGVVAKRTPPRWLAL 367
>Z68222-8|CAC70146.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 29.9 bits (64), Expect = 1.7
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Frame = -2
Query: 555 QENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALTPTNSSF 379
++N + +EGS S Y T TPI + S S N + Q + G V + SF
Sbjct: 211 KKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV-----SRSF 265
Query: 378 TPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--DIYCRTR 220
+ + NS+ + SA+ + I L+ + C+ + D CR
Sbjct: 266 SENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFDQLCRVD 325
Query: 219 YSEYNPARFQGVVMKILDPRATAL 148
+ R GVV K PR AL
Sbjct: 326 VTIEAAFRQPGVVAKRTPPRWLAL 349
>Z68217-11|CAE46673.1| 631|Caenorhabditis elegans Hypothetical
protein F58G6.5c protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.7
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Frame = -2
Query: 555 QENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALTPTNSSF 379
++N + +EGS S Y T TPI + S S N + Q + G V + SF
Sbjct: 229 KKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV-----SRSF 283
Query: 378 TPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--DIYCRTR 220
+ + NS+ + SA+ + I L+ + C+ + D CR
Sbjct: 284 SENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFDQLCRVD 343
Query: 219 YSEYNPARFQGVVMKILDPRATAL 148
+ R GVV K PR AL
Sbjct: 344 VTIEAAFRQPGVVAKRTPPRWLAL 367
>Z68217-10|CAC70099.2| 613|Caenorhabditis elegans Hypothetical
protein F58G6.5b protein.
Length = 613
Score = 29.9 bits (64), Expect = 1.7
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Frame = -2
Query: 555 QENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALTPTNSSF 379
++N + +EGS S Y T TPI + S S N + Q + G V + SF
Sbjct: 211 KKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV-----SRSF 265
Query: 378 TPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--DIYCRTR 220
+ + NS+ + SA+ + I L+ + C+ + D CR
Sbjct: 266 SENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFDQLCRVD 325
Query: 219 YSEYNPARFQGVVMKILDPRATAL 148
+ R GVV K PR AL
Sbjct: 326 VTIEAAFRQPGVVAKRTPPRWLAL 349
>Z68217-4|CAA92467.2| 499|Caenorhabditis elegans Hypothetical
protein F58G6.5a protein.
Length = 499
Score = 29.9 bits (64), Expect = 1.7
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Frame = -2
Query: 555 QENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALTPTNSSF 379
++N + +EGS S Y T TPI + S S N + Q + G V + SF
Sbjct: 97 KKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV-----SRSF 151
Query: 378 TPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--DIYCRTR 220
+ + NS+ + SA+ + I L+ + C+ + D CR
Sbjct: 152 SENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFDQLCRVD 211
Query: 219 YSEYNPARFQGVVMKILDPRATAL 148
+ R GVV K PR AL
Sbjct: 212 VTIEAAFRQPGVVAKRTPPRWLAL 235
>AF273780-1|AAG15129.1| 509|Caenorhabditis elegans nuclear receptor
NHR-34 protein.
Length = 509
Score = 29.9 bits (64), Expect = 1.7
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Frame = -2
Query: 555 QENRVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTN-LSSQVVNGDVALTPTNSSF 379
++N + +EGS S Y T TPI + S S N + Q + G V + SF
Sbjct: 107 KKNPKDSNNEGSTSPQYPTASTPISIPSTSTSQTPTSSVNSYNFQNIPGIV-----SRSF 161
Query: 378 TPQPLNPHNSMTALTPMPSASTQ----AKSSIKLQNCVAT-VSLGCELKLL--DIYCRTR 220
+ + NS+ + SA+ + I L+ + C+ + D CR
Sbjct: 162 SENLIMRDNSVPVMETSQSAALSHVPLVRYLIDLEKATDNLIDENCDFMSMEFDQLCRVD 221
Query: 219 YSEYNPARFQGVVMKILDPRATAL 148
+ R GVV K PR AL
Sbjct: 222 VTIEAAFRQPGVVAKRTPPRWLAL 245
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 420 VNGDVALTPTNSSFTPQPLNPHNSMTALTPMPSASTQAKSSIKLQNCVATV 268
+NG PTN + T PLN + T P+ A+T S+ + + TV
Sbjct: 231 LNGTTTTVPTNETTTTSPLN--GTTTTTVPINGATTTIPSNGNITSTTTTV 279
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 107 GAGRRXAERVEGDRXEDGAEXHRKKNEDE 21
GAGRR VE D E+ E ++NEDE
Sbjct: 17 GAGRRGRGGVEEDEEEEEDEDEEEENEDE 45
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -2
Query: 387 SSFTPQPLNPHNSMTALTPMPSASTQAKSS 298
S TP L+P +S+TA TP P ++TQA S+
Sbjct: 461 SKSTPSFLSPTDSLTATTP-PGSTTQAAST 489
>AL032663-5|CAA21765.1| 896|Caenorhabditis elegans Hypothetical
protein Y75B12B.6 protein.
Length = 896
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 576 LNKMEVSQENRVEKEHEGSISEMYSTPKTPIKAQNFSKE 460
L+K + ++ VE GS+ +TP TP K +F KE
Sbjct: 847 LDKFDDNEFLLVEGTRRGSVEHAPTTPTTPTKPMSFGKE 885
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 393 TNSSFT-PQPLNPHNSMTALTPMPSASTQAKSS 298
T++SF+ P PL H S + + M SAS Q KSS
Sbjct: 497 TSTSFSHPPPLPAHQSNSKIPRMSSASEQRKSS 529
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 393 TNSSFT-PQPLNPHNSMTALTPMPSASTQAKSS 298
T++SF+ P PL H S + + M SAS Q KSS
Sbjct: 513 TSTSFSHPPPLPAHQSNSKIPRMSSASEQRKSS 545
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/85 (23%), Positives = 32/85 (37%)
Frame = -2
Query: 546 RVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQP 367
R ++E E E + ++A+ KE + L + A P + P P
Sbjct: 699 RAKEEEERIREEAEIKEELRLRAEAKEKEKERLEKERLEKKAAAA-AAANPNPTPIPPTP 757
Query: 366 LNPHNSMTALTPMPSASTQAKSSIK 292
PH+S P STQ + I+
Sbjct: 758 ATPHSSAQQQPIPPPLSTQTSAEIQ 782
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/85 (23%), Positives = 32/85 (37%)
Frame = -2
Query: 546 RVEKEHEGSISEMYSTPKTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQP 367
R ++E E E + ++A+ KE + L + A P + P P
Sbjct: 699 RAKEEEERIREEAEIKEELRLRAEAKEKEKERLEKERLEKKAAAA-AAANPNPTPIPPTP 757
Query: 366 LNPHNSMTALTPMPSASTQAKSSIK 292
PH+S P STQ + I+
Sbjct: 758 ATPHSSAQQQPIPPPLSTQTSAEIQ 782
>Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical
protein C38C6.2 protein.
Length = 647
Score = 27.9 bits (59), Expect = 7.0
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Frame = -2
Query: 507 YSTPKTPIK-----AQNFSKEDAGVSGTNLSSQVVNGDVALT-------PTNSSFTPQPL 364
Y+ P++ +K A+ +EDA ++GT L ++V+G +T T + L
Sbjct: 526 YAEPQSTLKIFAKLAKLRQREDALMTGTTLIGRLVDGAFTITRFNNFENRTTGNIYVAAL 585
Query: 363 N--PHNSMTALTPMPSASTQAKSSI--KLQNCVA 274
N H LT +PS S KS+I NCVA
Sbjct: 586 NFAEHPVKLPLTDLPSNSKLHKSTIVTATSNCVA 619
>Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical
protein F17A2.3 protein.
Length = 463
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -2
Query: 495 KTPIKAQNFSKEDAGVSGTNLSSQVVNGDVALTPTNSSFTPQPLNPHNSMTALTPMPS 322
K+ + SKE + N ++ + AL P ++ TPQ L TA PM S
Sbjct: 323 KSEVNRHIKSKEHPLLEDQNFTACIPEASPALVPLTTASTPQHLTFKLPQTAALPMSS 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,739
Number of Sequences: 27780
Number of extensions: 248599
Number of successful extensions: 766
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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