Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H20
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   1.9  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   5.9  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.9  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   7.8  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 459 TVKKNSRLFIKKIQKRKLKYICN*Y 533
           T+KK+ +  + ++ K  L+Y+C  Y
Sbjct: 671 TIKKHGKAMVPRLSKHNLRYLCRVY 695


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 521 YVLKFPLLYFFYEKAGIFFNCKTHQRLRIKQKQLHN 414
           ++L  P L FFY K  I  +   H+R  ++ KQ  N
Sbjct: 564 WLLSLPPLQFFYIKDTIPHSKDNHKRQWLESKQFKN 599


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 14  YKELVY*FEXCFRILCMHVVTYVGNIF*FSFGKKNSYALYIFWPRKEHQK*LVRVE*YKN 193
           Y++ V  F      L + ++ Y  ++F  ++   N+Y  YIF       K  VRV  Y+ 
Sbjct: 56  YQKAVLDFHHLLTPLVVCIMDYHNDLF-LTYSLSNAYREYIFDGGLPFSKHQVRVNRYQQ 114

Query: 194 KRN 202
           K N
Sbjct: 115 KIN 117


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 503  LLYFFYEKAGIFFNCKTHQRLR-IKQKQLHNIVKIKGTTLFNLCIFIFF 360
            LLYFF+  +GI  N  T+  L+   ++   +  ++  +  F L I++FF
Sbjct: 904  LLYFFFIISGIMMNVATNVWLKHWSEENGKSSSELNPSPYFYLGIYLFF 952


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,086
Number of Sequences: 5004
Number of extensions: 52555
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)