Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H20
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0478 - 3516006-3516144,3516243-3516310,3516411-3516506,351...    36   0.041
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    31   0.87 
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034...    29   3.5  

>01_01_0478 -
           3516006-3516144,3516243-3516310,3516411-3516506,
           3516612-3516627,3516691-3516695
          Length = 107

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 106 KAELKYIPNVGHNVHAEDPKTXLKLVNQFLI 14
           KA +K IPN GH  H EDPK    ++ +FL+
Sbjct: 67  KATVKIIPNTGHLAHQEDPKMFNDILLKFLL 97


>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
            22436458-22436574,22436702-22436803,22437431-22437487,
            22437976-22438044,22438423-22438533,22438597-22438791,
            22439023-22439121,22439656-22440222,22440344-22440568,
            22441036-22441338,22441640-22441707,22441947-22442105,
            22442230-22442475,22442549-22442680,22443243-22443351,
            22444131-22444283,22444359-22444601,22444695-22444862,
            22445013-22445156,22445238-22445699,22446495-22446791,
            22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 100  ELKYIPNVGHNVHAEDPKTXLKLVNQFLIK 11
            E+  IP+ GH VH E+P   ++ + +FL++
Sbjct: 1715 EMIIIPDSGHAVHVENPLPLVRAIRKFLVR 1744


>01_06_1428 -
           37301697-37302175,37302300-37302471,37302570-37303403,
           37303847-37304012,37304334-37304573,37304765-37304905,
           37305623-37305735,37306549-37306614,37307242-37307480,
           37307615-37307897
          Length = 910

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 106 KAELKYIPNVGHNVHAEDPKTXLKLV 29
           K  L  +PN GH VH ++PK  L+++
Sbjct: 331 KVSLHVLPNSGHWVHVDNPKGLLEIM 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,634
Number of Sequences: 37544
Number of extensions: 256324
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)