Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H20
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   0.52 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   0.52 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   4.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.5  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 317 NNFHYEGHMLNYNNKKI 367
           NN++Y+ +  NYN+KK+
Sbjct: 307 NNYNYKNYNNNYNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 317 NNFHYEGHMLNYNNKKI 367
           NN++Y+ +  NYN+KK+
Sbjct: 318 NNYNYKNYNNNYNSKKL 334


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 511 SFLFCIFFMKRREFFLTVKLINVYVLNKNNYITSLRLKEL 392
           S+  CI FM      LTV ++N +    + Y+    +K L
Sbjct: 327 SYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIKML 366


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 511 SFLFCIFFMKRREFFLTVKLINVYVLNKNNYITSLRLKEL 392
           S+  CI FM      LTV ++N +    + Y+    +K L
Sbjct: 327 SYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIKML 366


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 317 NNFHYEGHMLNYNN 358
           NN++Y  +  NYNN
Sbjct: 90  NNYNYNNNYNNYNN 103


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 207 VAFLLFLYYSTRTNYFWCS 151
           V FL   YY T T  FW S
Sbjct: 13  VLFLALYYYLTSTFDFWKS 31


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 371 FIFFYCYNLTYDLHNGNC 318
           + + YCYNLT +  +  C
Sbjct: 216 YAYPYCYNLTPNQPSAQC 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,069
Number of Sequences: 438
Number of extensions: 3732
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)