Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H18
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   2.9  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   5.1  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   8.9  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   8.9  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 437 DVNTFFLKCS*SNSIITYSSLSLHIF 514
           D N+    C  SN++I +SS+ LH F
Sbjct: 553 DTNSVLNPCIPSNAVIEFSSIYLHYF 578


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 52  ILVMLIKGXLVQTSAHLYIIIFPYAQRRSRYICYSRE-DMLLF 177
           +LV +  G    + + LY I+FPYA     +I +S     LLF
Sbjct: 153 LLVAVSVGIAHSSLSRLYTILFPYAGSEHTHIGHSHNPSQLLF 195


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +1

Query: 73  GXLVQTSAHL-YIIIFPYAQRRSRYICYSREDMLLFHCYF 189
           G   +T AHL Y     YAQ   R  CY    ML+  C +
Sbjct: 738 GLFSETKAHLLYPNTHAYAQDVERLRCYEFLGMLIGKCIY 777


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 566 QNCWKAYIEEKKNYXDGTR 622
           +NCW +YI  ++ Y +  R
Sbjct: 171 ENCWMSYIRMERRYHENER 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,411
Number of Sequences: 5004
Number of extensions: 42003
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)