Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H15
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   109   4e-25

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  109 bits (261), Expect = 4e-25
 Identities = 66/192 (34%), Positives = 90/192 (46%)
 Frame = -1

Query: 584 NXLSAIPYLGTILVN*I*GGFAVDNXTLTRFYTXXXXXXXXXXXXXXXXXXXXHQTGSNN 405
           N LSA+P++G  LV+ + GGF+V N TL RF++                    H  GS+N
Sbjct: 149 NLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSN 208

Query: 404 PLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXINPYLLGDPDNFTPANPLVTPVH 225
           PLG+  N+D+IP +P++  KD                 NPY   +PD   PA+PL TP+ 
Sbjct: 209 PLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPYGFMEPDCALPADPLKTPMS 268

Query: 224 IQPE*YFLFAYAILRSIPNKLGGVXXXXXXXXXXXXLPFTFKKKIQGIQFYPINQIIF*R 45
           I PE Y L  YAILR+IPN   GV            LP      I+G  F P  +  F  
Sbjct: 269 IVPEWYLLPFYAILRAIPNFQLGVIAMLLSILVLLLLPLLDFSAIRGNSFNPFGKFFFWT 328

Query: 44  CLVIIILLT*XG 9
            +   ++L   G
Sbjct: 329 FVADFVILAWIG 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,317
Number of Sequences: 5004
Number of extensions: 21351
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)