Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H14
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    27   2.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   9.0  

>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 313 FVTLISLLLCVEI*LLKSI*HNIFYTNYEKQELKTTITKNT 435
           F+ L ++L    + +LKSI    +Y NY  ++L      NT
Sbjct: 256 FLNLKTVLFISHLDILKSITKQTYYENYRTEKLSNDSPSNT 296


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 291 TKFFCIIEDPKIFNLMLCLL 232
           T+FF +++ P +  LM CLL
Sbjct: 339 TRFFKLVQSPAVTYLMACLL 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,942
Number of Sequences: 5004
Number of extensions: 49093
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)