Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H14
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23484-1|AAC46766.2|  459|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 668 SSYSVCFYNLSHFNSVNMSVTWCC 597
           ++YS C YN S   SVN +VT CC
Sbjct: 363 TTYSQCPYNYSCQQSVNPTVTVCC 386


>U23484-1|AAC46766.2|  459|Caenorhabditis elegans Hypothetical
           protein EEED8.6 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 48  TIIHTXLHPHXQXNXCMLHVVLNFCFTKSLSTXYNQRLLWL 170
           T+I+  LH H Q   C L+  +N    +  ST    R LWL
Sbjct: 295 TVIYVDLHAHSQKPNCFLYGNVNMSAVEEKSTF---RQLWL 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,979
Number of Sequences: 27780
Number of extensions: 284309
Number of successful extensions: 535
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)