Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H11
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    64   7e-12
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   2.3  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    25   4.0  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   4.0  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    24   5.3  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   7.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    24   7.0  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    23   9.2  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 63.7 bits (148), Expect = 7e-12
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
 Frame = -2

Query: 323 IIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSDF-----NNIEFDSY 159
           +IPA  LI +A                 +T+K+IG Q +  YE +DF       + FDSY
Sbjct: 83  LIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELNDFVTNENEPVSFDSY 142

Query: 158 IIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPSLGVKXD 3
           ++P  +++    R L+VD              +T+ DVIHS  +PSLG+K D
Sbjct: 143 MVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCD 194


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 79  LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 192
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = +1

Query: 70  RIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 180
           ++W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLM 57


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 101 DYLHLIVGIHYFLFHWMGLY 160
           D+  L++GIH F +H   LY
Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = +1

Query: 70  RIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 180
           ++W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLM 57


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 131 YFLFHWMGLYM-SQIQYY*NLN 193
           YF+ HW G Y+ S +Q Y + N
Sbjct: 150 YFVPHWNGTYLASNVQIYNSSN 171


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 46  TSVAVIIIRIWLFIGKIIRLSTSNSRNSLFFISLDGIIYES 168
           TS++   + I    G I+RL    S N + F SL   I E+
Sbjct: 822 TSISNTRLAIQTPTGNIVRLREERSGNGVIFFSLSLTINET 862


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 203 RYEYSDFNNIEFDSYIIPSNEIKNNEFRLLDVD 105
           RYE  + +N EF++ +   +E   N F   D D
Sbjct: 82  RYEQEESDNEEFENVVKNGHEASTNVFYESDGD 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,060,911
Number of Sequences: 5004
Number of extensions: 16840
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)