Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H11
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198...    31   0.30 
01_06_1584 - 38441654-38442847                                         28   1.6  
01_06_0044 - 25922298-25923434                                         26   6.4  
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728...    26   8.5  

>01_01_0238 -
           1976645-1977561,1977649-1977909,1978243-1978275,
           1980556-1981345
          Length = 666

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
 Frame = +1

Query: 121 RNSLFFISLDGIIYESNSILLKSEYSYLQYH*CPI-DFSVISGL------LSSSNKY 270
           R+ LF +  D I YE+NS++   E ++     CP+ DF+V S L      +S++NKY
Sbjct: 80  RDHLFRV--DSIFYENNSLVAAVETTFAGDADCPVPDFNVTSSLSPYPFIISNTNKY 134


>01_06_1584 - 38441654-38442847
          Length = 397

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 43  ITSVAVIIIRIWLFIGKIIRLS 108
           +T + +I+I IW  +G+I+RLS
Sbjct: 56  VTRIVLILITIWWGVGEIVRLS 77


>01_06_0044 - 25922298-25923434
          Length = 378

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 224 IGHQ*Y*RYEYSDFNNIEFDSYIIPSNEIKNNEFRLLDVD 105
           IGHQ Y     +  N +  + +++P +E+ +    LLDV+
Sbjct: 143 IGHQDYLHSGLTVCNPVSGERWVLPPHEVSDETVVLLDVN 182


>02_05_0491 +
           29470575-29471351,29471574-29471806,29472697-29472856,
           29473149-29473394,29473492-29473628,29473874-29474207,
           29474283-29474444,29474717-29474791,29474866-29474966,
           29475042-29475111,29475210-29475266,29475357-29475418,
           29475505-29475577,29475663-29475884
          Length = 902

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 223 IDFSVISGLLSSSNKYNNRNDGKAMKINV 309
           +++SV SGL  +S KY++RN    +K N+
Sbjct: 505 VEYSV-SGLTDASEKYSSRNLSAPIKANL 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,603,729
Number of Sequences: 37544
Number of extensions: 74580
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)