Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H06
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical
           protein F07G11.4 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = -3

Query: 150 FKTVFLAADNRSAQLITREPQKRLAESEGCRLLRFEMTTRAL 25
           FK + + A+N ++ +I R P  ++  ++ C+++    T + +
Sbjct: 81  FKEIVIYAENSTSSIIVRTPHHKVTYNDQCQIITIFATAQLI 122


>Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 462 LLQILFKHQYKKQS*SYTVFVLCPTEQQLSS 554
           ++Q+LF H +++ S   T+  LCPT ++ SS
Sbjct: 16  VVQLLFAHGHRQLSIGETIENLCPTCEKTSS 46


>Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 462 LLQILFKHQYKKQS*SYTVFVLCPTEQQLSS 554
           ++Q+LF H +++ S   T+  LCPT ++ SS
Sbjct: 16  VVQLLFAHGHRQLSIGETIENLCPTCEKTSS 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,178
Number of Sequences: 27780
Number of extensions: 236985
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)