Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_H05
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 31 0.070
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.5
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 26 2.6
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 3.5
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 4.6
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 25 4.6
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 6.1
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 6.1
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 25 6.1
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 8.0
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 24 8.0
>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 31.1 bits (67), Expect = 0.070
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 157 TSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQTKDKNMKIKTG 303
T+ T+F S Y A + H SLL KL+ L+ + K K ++I G
Sbjct: 58 TNFTKF-SKFVYYLAITLHTSLLTKLIYCHADLYALQSIKYKRLRINNG 105
>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 116
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 155 FFSDPGQQLIMGIIARDLDHSDAEASITAGGIGCAY 48
F+S PG++ I I+ L S +GG G Y
Sbjct: 27 FYSTPGERRIKDILTEKLSPSSLRVIDVSGGCGSMY 62
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 2.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 211 GKKKPNITPSHSRNESKKYFFRIRDNN*LWVL*PAT*TTRMLKQVLLQEASVALMPT 41
G KP I SR+ ++ YFF + LW PA LK+ + E ++ PT
Sbjct: 5 GLPKPWIVKI-SRSRNRPYFFNTETHESLWEP-PAATDMAALKKFIANELQESVTPT 59
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.4 bits (53), Expect = 3.5
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -2
Query: 254 KDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEV 156
K+LIV TS ++ L +E+ +NAI KR++E+
Sbjct: 711 KELIVQTSSFQKELVEERERHNAI--SKRLQEI 741
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.0 bits (52), Expect = 4.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 225 IKTSTYYKIFTLYNTDQR*KYENQNGSELHFVVVFLKRLPQCVMCHVRR 371
++ TY +F +T R + ++ + VFL+ LPQC + +R+
Sbjct: 64 LEDKTYSPLFKAGHTTWRIVLFPKGCNQTEYASVFLEYLPQCKVEAIRK 112
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 4.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 282 KYENQNGSELHFVVVFLK 335
K+ N +GS++HF +FLK
Sbjct: 387 KFSNIDGSDIHFRYLFLK 404
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 6.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 139 PGSEKNTSLTRFLSGMALYSAFSCHRSL 222
PG T++ S +SA SCHR+L
Sbjct: 453 PGKTVATTVCHSSSSSGDFSALSCHRNL 480
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 6.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 129 QLLSRIRKKYFFDSFLEWDGVIFGF 203
Q S I +FD EWD V+ GF
Sbjct: 499 QKTSSILVDLYFDFKAEWDNVMLGF 523
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 146 DPGQQLIMGIIARDLDHSDAEASITAGGIGC 54
+ G +++ I R + H A++ + GG+GC
Sbjct: 246 ETGFAMLVEITERAMAHIRADSVLIVGGVGC 276
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.2 bits (50), Expect = 8.0
Identities = 8/33 (24%), Positives = 18/33 (54%)
Frame = -1
Query: 354 LHIVVNVLKKQQQNEVRSRFDFHIFIFGLCYTM 256
LH V+ +++ ++ D+ I + G+ YT+
Sbjct: 197 LHAVLLMIRSDDPHDKSQTIDYLIIVIGILYTL 229
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 24.2 bits (50), Expect = 8.0
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 103 RSRAIIPIISCCPGSEKNTSLTRFLSGM-----ALYSAFSCHRSLLLK---LVPTIRSLH 258
R A+ P+ +C + N T G A+++A S +SL+L+ L I+ H
Sbjct: 47 RKHAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAAIS--KSLILQEPSLKQVIKDTH 104
Query: 259 CITQTKDKNMKIKTG 303
C+ K K + KTG
Sbjct: 105 CVLNDKRKVERKKTG 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,272
Number of Sequences: 5004
Number of extensions: 32943
Number of successful extensions: 85
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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