Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_H05
(411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 27 4.0
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 27 4.0
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 27 4.0
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 4.0
AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical ... 27 4.0
AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical... 27 4.0
U23525-7|AAC46569.1| 557|Caenorhabditis elegans Yeast smf (diva... 27 7.0
U23525-6|AAU05559.1| 471|Caenorhabditis elegans Yeast smf (diva... 27 7.0
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 26 9.2
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 9.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 9.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 9.2
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 26 9.2
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 174 ETSQRSIFFGSGTTTDYGYYSPRP 103
E SQR+ GSG++ YG Y P P
Sbjct: 100 ERSQRATGSGSGSSGGYGTYPPAP 123
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.5 bits (58), Expect = 4.0
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -2
Query: 263 IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 84
++ +LI G + K +Q + ++ PL + +P QQ+I I+ + L DA+
Sbjct: 2468 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 2524
Query: 83 ASITAGGIG 57
I A G G
Sbjct: 2525 GQIPAYGFG 2533
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform a protein.
Length = 1633
Score = 27.5 bits (58), Expect = 4.0
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -2
Query: 263 IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 84
++ +LI G + K +Q + ++ PL + +P QQ+I I+ + L DA+
Sbjct: 1399 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 1455
Query: 83 ASITAGGIG 57
I A G G
Sbjct: 1456 GQIPAYGFG 1464
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.5 bits (58), Expect = 4.0
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -2
Query: 263 IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 84
++ +LI G + K +Q + ++ PL + +P QQ+I I+ + L DA+
Sbjct: 7314 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 7370
Query: 83 ASITAGGIG 57
I A G G
Sbjct: 7371 GQIPAYGFG 7379
>AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical
protein K05F6.11 protein.
Length = 343
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 146 DPGQQLIMGIIARDLDHSDAEASI 75
D G+QL++G + RDL H D + +
Sbjct: 318 DNGKQLLIGTVFRDLTHCDIDVPL 341
>AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical
protein E01A2.8 protein.
Length = 499
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 146 DPGQQLIMGIIARDLDHSDAEASI 75
D G+QL++G + RDL H D + +
Sbjct: 474 DNGKQLLIGTVFRDLTHCDIDVPL 497
>U23525-7|AAC46569.1| 557|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 1, isoform
a protein.
Length = 557
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = -2
Query: 308 FAPVLIFIFLSLVCVIQCKDL-----IVGTSFNK 222
FA VL ++L+L C++ C+ + I G SFNK
Sbjct: 501 FAYVLFVLYLALYCLVSCEIIPDTVSIRGFSFNK 534
>U23525-6|AAU05559.1| 471|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 1, isoform
b protein.
Length = 471
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = -2
Query: 308 FAPVLIFIFLSLVCVIQCKDL-----IVGTSFNK 222
FA VL ++L+L C++ C+ + I G SFNK
Sbjct: 415 FAYVLFVLYLALYCLVSCEIIPDTVSIRGFSFNK 448
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 272 VCVIQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIM 123
V VI C + ++++ L W EYN +P+ K + + F + G +I+
Sbjct: 4671 VAVITCYER--NQAYSRGLTW----EYNGVPMPKNLAGIHFMNNGSLVIL 4714
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 272 VCVIQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIM 123
V VI C + ++++ L W EYN +P+ K + + F + G +I+
Sbjct: 4671 VAVITCYER--NQAYSRGLTW----EYNGVPMPKNLAGIHFMNNGSLVIL 4714
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 272 VCVIQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIM 123
V VI C + ++++ L W EYN +P+ K + + F + G +I+
Sbjct: 4671 VAVITCYER--NQAYSRGLTW----EYNGVPMPKNLAGIHFMNNGSLVIL 4714
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 272 VCVIQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIM 123
V VI C + ++++ L W EYN +P+ K + + F + G +I+
Sbjct: 4671 VAVITCYER--NQAYSRGLTW----EYNGVPMPKNLAGIHFMNNGSLVIL 4714
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 245 IVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDP 141
+ GT+F+K L +A+ +A+ L +++ E+ DP
Sbjct: 1756 VAGTTFSKCYLKLSEADDDAVDLLRQLSEIKIIDP 1790
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 245 IVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDP 141
+ GT+F+K L +A+ +A+ L +++ E+ DP
Sbjct: 1756 VAGTTFSKCYLKLSEADDDAVDLLRQLSEIKIIDP 1790
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 245 IVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDP 141
+ GT+F+K L +A+ +A+ L +++ E+ DP
Sbjct: 1756 VAGTTFSKCYLKLSEADDDAVDLLRQLSEIKIIDP 1790
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 272 VCVIQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIM 123
V VI C + ++++ L W EYN +P+ K + + F + G +I+
Sbjct: 4671 VAVITCYER--NQAYSRGLTW----EYNGVPMPKNLAGIHFMNNGSLVIL 4714
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,535,013
Number of Sequences: 27780
Number of extensions: 187518
Number of successful extensions: 499
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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