Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H05
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   0.58 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   9.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 147 RKKYFFDSFLEWDGVIFGFFLPQKPLIKTSTYYKIFTLYNT---DQR*KYENQNGSELH 314
           RKK     + ++ G+++   LP    I +  Y +  T  N    ++R +  N+ G   H
Sbjct: 185 RKKVLLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKGVVFH 243


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 127 ISCCPGSEKNTSLTRFLSGMALYS 198
           I  C G    T+  RFL G+  Y+
Sbjct: 402 IGGCNGLHTTTAHNRFLGGIGGYN 425


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 306 ELHFVVVFLKRLPQCVMCH 362
           +LH V  + +++ +C +CH
Sbjct: 248 KLHQVAHYGEKVYKCTLCH 266


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 52  AQPMPPAVILASASEWSRSRAIIP 123
           A P PP+V + SA   +   A+ P
Sbjct: 50  ATPTPPSVPVGSAVAGTAGGALFP 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,358
Number of Sequences: 438
Number of extensions: 2563
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)