Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_H04
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 246 3e-66
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 29 0.52
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 29 0.91
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 2.1
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.1
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 27 2.8
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 27 3.7
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.9
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 4.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.9
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 6.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.5
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 25 8.5
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 246 bits (602), Expect = 3e-66
Identities = 119/215 (55%), Positives = 156/215 (72%), Gaps = 1/215 (0%)
Frame = -3
Query: 736 SAHEQIXVYGDDVEVDYRGYEVSVXNFIRXXTGRVPPDTPRSKQLLTDEGSNILIYLTGH 557
+A + +YG+++E+DY+GYEV+V FIR T RVP +TP SK+LLT+E SNILIY+TGH
Sbjct: 86 NADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLLTNERSNILIYMTGH 145
Query: 556 GGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYSPNILATA 377
GGDGF+KFQD+EE++S++LADA+EQ+ Q KRYNEI F++DTCQA+S+Y K YSPN+LA
Sbjct: 146 GGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEILFMVDTCQANSLYTKIYSPNVLAIG 205
Query: 376 SSLVGEDSLSHHVDSAIGVYIIDRYTYYVLEFLEN-VHPNSKRTMSEFLAVCPKSACLST 200
SS VG S SHH D IGV +IDR+T+ LEFLEN V SK TM + + ST
Sbjct: 206 SSEVGTSSYSHHADIDIGVAVIDRFTFSNLEFLENRVDSKSKLTMQDLINSYNPYEIHST 265
Query: 199 VGVRKDLFNRDPSKVPITDFFGSVRPVILTTDPIN 95
GV+ R P + ITDFFG+VR + L ++ IN
Sbjct: 266 PGVQPINLRRSPDDILITDFFGNVRDIELHSEKIN 300
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 29.5 bits (63), Expect = 0.52
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 250 TMSEFLAVCPKSACLSTVGVRKDLFN 173
++S FL +CP++ CL TV V N
Sbjct: 222 SLSSFLKICPRNDCLQTVDVAFQFLN 247
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 2 SLHRQLWHIVPFHLYLGFILSL 67
++HR + +V FHL+L FILSL
Sbjct: 93 AVHRLSFTLVMFHLFLAFILSL 114
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 481 MWQKKRYNEIFFIIDTCQASSMYEKFYSPNILATASSLVGEDSLS 347
+WQ K IF + A ++ YS I+ + LVG DSL+
Sbjct: 1128 VWQSKTIEMIFRYVSD-PAEALESSLYSSLIIIGSDDLVGPDSLN 1171
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/88 (25%), Positives = 42/88 (47%)
Frame = -3
Query: 610 KQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTC 431
K L + +GS+I ++ G+G D +++ E Q D + +R+N+ ++ +
Sbjct: 394 KNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVILIDTAGRRHND-QRLMGSL 452
Query: 430 QASSMYEKFYSPNILATASSLVGEDSLS 347
+ + K I A +LVG DSL+
Sbjct: 453 EKFTKATKL--DKIFQVAEALVGTDSLA 478
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 187 KDLFNRDPSKVPITDFFGSVRPV 119
K + D K+PI ++FG V PV
Sbjct: 1089 KKFYAGDEKKIPIVEYFGGVPPV 1111
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 433 CQASSMYEKFYSPNI-LATASSLVGEDSLSHHVDSAIGVYIIDRYTYYVLEFLENV 269
C A + +FY+ + T S+ S V S + YI+ TYY+ + +N+
Sbjct: 325 CIAGFVVNEFYTTRTRIITPSAFKTLSLTSVMVTSFLHYYIVSTITYYIPVYFQNI 380
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 304 YTYYVLEFLENVHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRDPSKVPITDFFG-SV 128
+ YY+ +FLEN+ + ++ L S C + + L P+K+ + +V
Sbjct: 324 WMYYLWQFLENLRFATPLLVTAQLTPVGISGCAAALTTGYLLKRLKPTKIMVVSMIAFTV 383
Query: 127 RPVILTTDPIN 95
+++ T PI+
Sbjct: 384 GTILIATAPIH 394
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 473 LPHLFQSISKLLAGH 517
LPH+ +SISKLLA H
Sbjct: 740 LPHMKKSISKLLADH 754
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 432 HVSIMKKISLYLFFCHICSKASASSWLVTSSES 530
H + KK+SL C CSK S+S ++ S S
Sbjct: 1418 HNAYNKKLSLLFDICRGCSKLSSSDPVLCKSNS 1450
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 32 PFHLYLGFILSLFLS--FWCLYNIYRICCQDHWSN*TKEVGDRHFT 163
P+H++ F+ +FLS + + N+Y C S TK GD HFT
Sbjct: 686 PWHMFTSFVQYIFLSIMYTNVLNVYAFCNTHDVSWGTK--GD-HFT 728
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 283 FLENVHPNSKRTMSEFLAVCPKSACLSTVG 194
F++N++PNS + L S C ST G
Sbjct: 99 FVDNLNPNSSHFSASLLPASLSSLCDSTCG 128
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -3
Query: 271 VHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRDPSKVPITDFFGSVRPVILTTDPINI 92
V NS R + ++ CPK ++ +++ +DP+ +PI FG + P +P ++
Sbjct: 302 VFANSSRNLENLIS-CPKMETPTSSVYVVNVYYKDPNVLPIRG-FGLLIPSCTPNNPNHV 359
Query: 91 V 89
+
Sbjct: 360 L 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,514
Number of Sequences: 5004
Number of extensions: 58619
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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