Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H02
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    40   4e-04
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    36   0.007
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   1.8  
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa...    26   4.0  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   5.3  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    25   9.3  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   9.3  

>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 557 KNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKD 432
           KNG+G +    +RI F +C   G+S+GM++F+   L   +K+
Sbjct: 13  KNGLGSFTRPCRRIEFSYCNWGGSSKGMKEFLSTKLESLAKE 54



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -3

Query: 436 KTXPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSR 257
           K    V  ++  R+ + P+I   Y  G    +     +   I +   L R   G     R
Sbjct: 53  KESQDVEFHVTNRQGKHPLIRAYYNTGREKVICTRKMSASSIFQKAILCRDSDG--LKPR 110

Query: 256 LRKYQY-TNHPSVQGPWTPFT 197
           L KY   + +PSV+G W+PF+
Sbjct: 111 LIKYPVESTNPSVRGIWSPFS 131


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 150 NLTSGSSAVFNSGSLNVNGVQGPWTEGWFVYWYLRSLEFQLLPC*VR 290
           ++T   S  +        G+  PWT+ W   W+L SL++    C ++
Sbjct: 425 SITKIKSLFYERKEYTAKGISQPWTQLWVTLWFLSSLQYYAYECVIK 471


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 278 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQIFPNYD 382
           +L  ++ +  YD+  GFV    P+  P ++FP+ D
Sbjct: 55  VLDDDRANASYDISSGFVHIKFPKETPGEVFPDLD 89


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 262 SRLRKYQYTNHPSVQGPWTPFTFKDPELNTAELP 161
           SRL+K ++ N P+ +G +T +T  +    + E P
Sbjct: 744 SRLKKEKHKNRPASKGTYTTYTSSEERQRSTEDP 777


>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
           Psf2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 296 IVPNSTRQQLELETPQVPVHEPP 228
           IVP+ T  QL L +  +P+ +PP
Sbjct: 27  IVPSETMDQLPLVSATIPIMKPP 49


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 394 VYVALNTPPLQGLSFEKSTKSCSMKSLIPRLAP-LDLQNLKTIL 522
           + + ++ PP Q L  E   +   MK   PR AP + +Q L+ +L
Sbjct: 720 INILMDGPPAQSLGVESVDEDVMMKPPRPRNAPIISVQLLQRVL 763


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 227 GVVRVLVLAESRVPVVALLSSEQFDP 304
           GV  ++ L  S+VP+  ++SS+  DP
Sbjct: 37  GVTLLIFLVMSQVPLYGIVSSDSSDP 62


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 445 ISQKTXPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHN 329
           +S+ T     V +KP     P +  EYL+ +   +SVH+
Sbjct: 50  VSKSTTKKSSVVIKPSTITAPWLENEYLDSNTSLLSVHS 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,298
Number of Sequences: 5004
Number of extensions: 60523
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)