Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_H02
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723 37 0.016
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 32 0.34
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 31 1.0
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 29 3.2
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 29 3.2
07_03_0905 + 22459687-22460071,22461766-22461888,22461986-224620... 28 5.5
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281... 28 5.5
12_02_0288 + 16856922-16858046 28 7.3
07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 28 7.3
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 28 7.3
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 28 7.3
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 27 9.7
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35... 27 9.7
>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
Length = 119
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 542 RYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDXP 426
R V QLQ++V +C G+SRG+R F+E L F + P
Sbjct: 4 RGVWQLQKLVVNYCDWGGSSRGIRAFMEAHLPAFKEKNP 42
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = -3
Query: 427 PGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRK 248
P + V + R + P + G Y N + + V N E+I+ R G +LR
Sbjct: 42 PHLEVVTELVRGQHPNLKGIYKNHNERVVCVRNLAPEDILLQATRLRNSLGRKV-VKLRT 100
Query: 247 YQYTNHPSVQGPWT 206
T PSVQG WT
Sbjct: 101 RHVTKRPSVQGTWT 114
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 32.3 bits (70), Expect = 0.34
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = -2
Query: 356 GQIVDERPQQNPRGDRKMG--RIVPN-STRQQLELETPQVPVHEPPLGPRTLDSVHVQ-- 192
G I+ PQQ P+G R R PN Q++ L P +P PP GP L +Q
Sbjct: 476 GSIISPTPQQGPKGSRPSRGLRGRPNVRDPQRMGLPVPLMP--PPPFGPLGLPPGPMQPI 533
Query: 191 GPRIEH 174
GP + H
Sbjct: 534 GPNMSH 539
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 591 IFKIGVRPCALEKWRRTIRVSIAENSLQVLQIQRSQPWYERLHRARFG*FLKRQXLE 421
+FK +R A W+R + + + E +L++ QP Y LH F +K Q E
Sbjct: 66 LFKDTLRKAA-HAWKRIVELRLTEEEANLLRLYVDQPGYVDLHWGMFVPAIKGQGTE 121
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 274 NNWNSRLRKYQYTNHPSVQGPWTPFTFKDPELNTAELPD 158
N WN+R ++ Q T P + F D E+ E PD
Sbjct: 211 NFWNTRCKRIQRTGEPLYPKEFNHFKLTDLEVMNCESPD 249
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 534 VSIAENSLQVLQIQRSQPWYERLHR 460
+ I S Q L++Q + WYE+LHR
Sbjct: 1311 IGILTYSQQHLEVQLKESWYEKLHR 1335
>07_03_0905 +
22459687-22460071,22461766-22461888,22461986-22462086,
22462229-22462301,22462771-22462848,22462995-22463065,
22463539-22463841,22464180-22464302,22464539-22464736
Length = 484
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 575 FVRAPLKNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVD 444
FV AP G+G V Q+ CKSNGAS G+++ D D
Sbjct: 294 FVPAPGYEGLGDLVEQISS-----CKSNGASTGVQEDRSNDFND 332
>04_04_0746 +
27726736-27727118,27727518-27727544,27728042-27728126,
27729252-27729809
Length = 350
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 356 GQIVDERPQQNPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG 222
G IV ER NP G ++ G V +S+ QQ+ P+ PLG
Sbjct: 171 GVIVGERRCSNPSGKKQQGGRVRSSSAQQM------APIRPKPLG 209
>12_02_0288 + 16856922-16858046
Length = 374
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 352 RLWMSVHNKTHEEIVKWVELFRT-QQGNNWNSRLRKYQ-YTNHPSVQGPWTPFTFKDP 185
R +M V +K H ++V+ L QQG ++ R+ + YT+H + WT +K P
Sbjct: 57 RNYMLVFHKRHRQLVQDSYLPEILQQGRALTAKNRQRRLYTHHENHMSTWTHVPWKHP 114
>07_03_1004 +
23244479-23244648,23245104-23245276,23245535-23245638,
23245849-23246037,23246508-23248076
Length = 734
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 308 KMGRIVPNSTRQQLELETPQVPVHEPPLGPR 216
++ +++P STR++L V V E P GPR
Sbjct: 691 RVAKLLPRSTRERLRKLVESVFVGEGPTGPR 721
>06_03_0968 - 26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Frame = -2
Query: 464 IEQDLV--DFSKDXPWSGGVFKAT*TSWAGHSWGIFERGQIVDERPQQNPRGDR--KMGR 297
+ DL+ + +D G V++ TS S E G ++ + G+ G
Sbjct: 949 VPSDLIKESWGEDGTTFGTVYQQRATSVDNVSSRHDENGHVILGANNSSYGGENGSNNGI 1008
Query: 296 IVPNSTRQQLELETPQVPVHEPPLGPRTLDSVHVQGPRIEHGRTTRR 156
+ NS+ Q + + + E +GP+T D V+ +EH RR
Sbjct: 1009 LDMNSSSSQRDAASSTMMASEKGIGPKTADQVNYISDALEHDGLRRR 1055
>04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 27.9 bits (59), Expect = 7.3
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Frame = -2
Query: 419 GGVFKAT*TSWAGHSWGIFERGQIVDERPQQNPRGDRKMGRIVPNSTRQQLELETPQV-- 246
GG F + W S + E QIV R +N RK + + +Q+ +LE Q
Sbjct: 967 GGTFSSRHNQWRAGSAQVQEALQIVKCRANKNVTPVRKKEKQKMSDQQQEEDLEEKQKMG 1026
Query: 245 -PVHEPPLGPRTLDSVHVQGPRIEHGRTTRREIR**QSTTRN 123
E PR + + + P T +E+R + T RN
Sbjct: 1027 DQQQEEDQNPREAEMIE-EAPVQLFSITQNQEMRDVEDTNRN 1067
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 332 QQNPRGDRKMGRIVPNSTRQQLELETPQVPVHEPP 228
Q+ GD+ + R + + Q EL PQ P PP
Sbjct: 3304 QRGTNGDKPIARFLHDQGAQSPELTHPQQPPESPP 3338
>08_01_0051 -
355392-355450,355507-355634,356271-356425,356883-357012,
357600-357739,358384-358552,360286-360557
Length = 350
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 320 RGDRKMGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVHVQGPRIEHGR 168
R D + R PN+TR + + Q PP GP T V G + + R
Sbjct: 25 RHDIRTARPTPNATRSRRDQGNAQPYPPPPPRGPGTTWVPQVSGTKYQAAR 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,207
Number of Sequences: 37544
Number of extensions: 391800
Number of successful extensions: 1102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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