Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H02
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical pr...    73   2e-13
AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical...    29   2.8  
AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z81038-9|CAB02765.1|  189|Caenorhabditis elegans Hypothetical
           protein C25A1.13 protein.
          Length = 189

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 39/107 (36%), Positives = 57/107 (53%)
 Frame = -3

Query: 427 PGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHNKTHEEIVKWVELFRTQQGNNWNSRLRK 248
           P VV+Y +P R+  P I  EY NG  L ++  N T +E+ K V L  ++ G     +L  
Sbjct: 78  PSVVIYAQPVRNSNPSIRAEYGNGRTLQINAKNMTQDEVSKDVHLLFSRSGEPV-VKLES 136

Query: 247 YQYTNHPSVQGPWTPFTFKDPELNTAELPDVRFGSNNRLPATATEQL 107
            Q    PS+QG WTP T+   E+NT +LP  +F  +     +ATE +
Sbjct: 137 RQSALVPSIQGQWTPITWLPTEMNTEQLPAKQFSKHKSTATSATEYI 183



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/52 (44%), Positives = 33/52 (63%)
 Frame = -2

Query: 581 SAFVRAPLKNGVGRYVCQLQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDXP 426
           S F++ P  NG+ RY  QL RI  +FCK + +S G+R+FIE  LV+  +  P
Sbjct: 27  SDFLKIPAYNGISRYTNQLHRITVRFCKQSESSVGVRNFIENQLVEIGRKNP 78


>AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical
           protein Y63D3A.7 protein.
          Length = 92

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 527 LQRIVFKFCKSNGASRGMRDFIEQDLVDFSKDXP 426
           L+ I    C+ + AS G+R FIE D V   K  P
Sbjct: 10  LREIRIHVCQKSPASAGVRAFIENDYVGIKKANP 43


>AL132952-7|CAB61139.2|  670|Caenorhabditis elegans Hypothetical
           protein Y51H4A.7 protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 346 WMSVHNKTHEEIVKWVELFRTQQ 278
           W+ V++K  EEIV W++ +R ++
Sbjct: 284 WLDVYSKDLEEIVNWIKEYREKK 306


>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 305 MGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVHVQGPRIEHGRTTRREI 150
           +G  +P+  R+ L LETP    HE  L   T+ +V  Q   +    +T  E+
Sbjct: 57  VGTCMPDIFRKPLILETPTAITHELTLQWTTVSNVEEQKVMVTDENSTMSEV 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,232,154
Number of Sequences: 27780
Number of extensions: 337134
Number of successful extensions: 972
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)