Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H02
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   1.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.7  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 171 PNYPT*DSVVTIDYPQRQLN 112
           PN PT DS V+   P+ +LN
Sbjct: 16  PNMPTMDSTVSSAKPEPELN 35


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 278 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQ 364
           +LSSE ++P  D +  + ++     +PV+
Sbjct: 115 ILSSESYNPQVDFVADYKIEGKVLLLPVR 143


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 186 GSLNVNGVQGPWTEGWF 236
           G+ N+NG    W +G F
Sbjct: 224 GNYNINGFNFQWKDGLF 240


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 58  TPPFLIHPTFVSRTSVSTVQLPLRVVDCYYRISRRVVRPC 177
           T PFL  P      S S  +L L +++ +   S  +  PC
Sbjct: 17  TSPFLGGPQLTDVCSASNGELFLALLNFFVATSPVIGEPC 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,475
Number of Sequences: 438
Number of extensions: 5110
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)