Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H01
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0943 + 33204112-33204136,33204703-33205743,33205786-332059...    29   4.7  
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442...    28   6.2  

>01_06_0943 +
           33204112-33204136,33204703-33205743,33205786-33205926,
           33206205-33206245,33208250-33208346,33208599-33208836,
           33208937-33209087,33209155-33209454
          Length = 677

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 102 IAHCLMRLHSKXQLRLRHEDLKEKRHQXDV 13
           IAH L+ LH   +LR+ H DLK      D+
Sbjct: 468 IAHGLLYLHKHSRLRIIHRDLKASNILLDI 497


>01_05_0634 +
           23843152-23843272,23843441-23843628,23843876-23844205,
           23844319-23844565,23844591-23844668,23844740-23845024,
           23845139-23845225,23845365-23845415,23845625-23845761,
           23845853-23846437
          Length = 702

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 318 YHFIFSIVKLLNRYDTIIVRNERRLYNYHTKFI--RHTIHTE 437
           +HFI  ++ ++N +  I  R ++   N   KF+  RH++HT+
Sbjct: 473 FHFIVIVIAIVNCFCCIFWRKKKLQKNGLKKFLEKRHSLHTK 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,479,033
Number of Sequences: 37544
Number of extensions: 226835
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)