Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_H01
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   4.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   8.5  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.5  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.5  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.5  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 525 KLHFNVSIVNIALSCKSNTLKMFLYK 602
           K+H N+ ++    S KS T    +YK
Sbjct: 5   KIHINIVVIGHVDSGKSTTTGHLIYK 30


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 595 CINPYTFDNFKLW 633
           C+NPY  D+   W
Sbjct: 110 CVNPYDRDSLSCW 122


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 525 KLHFNVSIVNIALSCKSNTLKMFLYK 602
           K+H N+ ++    S KS T    +YK
Sbjct: 5   KIHINIVVIGHVDSGKSTTTGHLIYK 30


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 389 PLQLPYQIHTPYNTYRKLQINK 454
           PL   Y  +  YN Y K   NK
Sbjct: 87  PLSNNYNYNNNYNNYNKHNYNK 108


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 410 IHTPYNTYRKLQINK*NFTE 469
           IH   N Y+KLQ    N+ E
Sbjct: 90  IHNNNNNYKKLQYYNINYIE 109


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 410 IHTPYNTYRKLQINK*NFTE 469
           IH   N Y+KLQ    N+ E
Sbjct: 90  IHNNNNNYKKLQYYNINYIE 109


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 410 IHTPYNTYRKLQINK*NFTE 469
           IH   N Y+KLQ    N+ E
Sbjct: 90  IHNNNNNYKKLQYYNINYIE 109


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 410 IHTPYNTYRKLQINK*NFTE 469
           IH   N Y+KLQ    N+ E
Sbjct: 90  IHNNNNNYKKLQYYNINYIE 109


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 410 IHTPYNTYRKLQINK*NFTE 469
           IH   N Y+KLQ    N+ E
Sbjct: 323 IHNNNNNYKKLQYYNINYIE 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,314
Number of Sequences: 438
Number of extensions: 3422
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)