Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G23
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF125455-2|AAP13747.2|  431|Caenorhabditis elegans Hypothetical ...    28   5.4  
AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical ...    28   7.2  
AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.1a protein.
          Length = 702

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 236 KGIYFYVLNYKL**LCFINSKFWDKSVGSYYVW 334
           KGI F  +NY+L  L F+N +  DK  G++ +W
Sbjct: 159 KGIAFVSINYRLGPLGFMNYQNGDKLEGNFGIW 191


>AF125455-2|AAP13747.2|  431|Caenorhabditis elegans Hypothetical
           protein Y48A5A.1 protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 582 RTKLTKLKKNRVLFVCNVFDTKIFFSHLDIVLNY 481
           RTKL  LKK++     N  D +I  S +DIV  Y
Sbjct: 234 RTKLKDLKKSKTSAKINGNDVEIMTSLIDIVFGY 267


>AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 500 KCEKKILVSNTLQTNKTRFFFSLVNLV 580
           KC +++L+S T   N    +FSLVN V
Sbjct: 365 KCARRVLISGTPIQNDLLEYFSLVNFV 391


>AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 500 KCEKKILVSNTLQTNKTRFFFSLVNLV 580
           KC +++L+S T   N    +FSLVN V
Sbjct: 365 KCARRVLISGTPIQNDLLEYFSLVNFV 391


>Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical
           protein T03E6.8 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = -3

Query: 542 SFVMCLTLKFFSRI*TLC*IINLKASFTFHSL*ESCIKIRLLIKEKTIISYL*FVSLA 369
           S + CL + + SR       + L+ +FTF  + ++C+ + L+I    I+S L +  ++
Sbjct: 225 SVLTCLKIVYDSRKIVSRETLTLQRNFTFILMYQACVCVALIIVPLAIVSTLFYADIS 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,777,404
Number of Sequences: 27780
Number of extensions: 172157
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)