Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G22
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.72 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.9  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   5.1  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   6.7  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.9  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    25   8.9  

>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 261 DDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKF-ADYTPEEQQSRL 118
           DD+D E  Y+  +       +L++KN Y+TF  ++F    TP   QS L
Sbjct: 367 DDSDSERSYRRVRDQYLSKPRLSDKNRYSTF--SEFPGQGTPSASQSNL 413


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +1

Query: 103 RQPQSQPALLFLRSIISKFVNAKRSIWILLVQL 201
           R  ++Q ALL L  I SKF N   + W LLVQL
Sbjct: 866 RDFRAQLALLVLFWISSKFGNIIDASWPLLVQL 898


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 546  VLNTYWPSFYTRAAFRAEVTLPYRP 620
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 395 TKFIFAQCINSGTGLLVPSSATFTQMCRLVDRYVIYI 505
           TKF+FAQ  +    LL+  + T T    ++  Y IY+
Sbjct: 162 TKFLFAQDTDFQAALLITGNLT-TNETSIIPSYEIYV 197


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 371 VAINNATLTKFIFAQCINSGTGLLVPSSA 457
           + I+  +LTK +   C++ GTG +  S A
Sbjct: 470 ILIHRHSLTKNLQVNCVHRGTGSITDSQA 498


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 253 RQRAALSIIQETLGRDKPIEREESIYYVW 167
           R+RAALS +        P+  +ES +Y W
Sbjct: 154 RKRAALSKLGHPAFHFLPMNNKESFHYAW 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,706
Number of Sequences: 5004
Number of extensions: 45783
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)