Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G17
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   3.3  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   7.6  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   10.0 

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 642 WKEGHSRSCSCWC-DQITTLTGLP 574
           +K G S SC CW  D ++ +TG P
Sbjct: 293 YKHGFSVSCCCWLPDGLSFITGSP 316


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 184 IVPLYKMHTIIYHGS 228
           ++PL +MH I++HG+
Sbjct: 604 VIPLIEMHDILFHGN 618


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 151 NLYMIHYLTTTIVPLYKMHTI 213
           NLYM+  L T I+P  + H +
Sbjct: 515 NLYMVDMLKTLIIPAVRSHDL 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,708
Number of Sequences: 5004
Number of extensions: 41346
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)