Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_G17
(675 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64643-1|CAA45917.1| 291|Homo sapiens C6.1A protein. 35 0.23
S72931-1|AAB30469.2| 363|Homo sapiens T-cell receptor alpha cha... 35 0.23
S68015-1|AAB29005.2| 321|Homo sapiens c6.1A protein. 35 0.23
BX470111-6|CAO03576.1| 247|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BX470111-5|CAI41654.1| 291|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BX470111-4|CAO03575.1| 292|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BX470111-3|CAI41655.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BX470111-2|CAO03574.1| 226|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BX470111-1|CAO03573.1| 90|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BX293995-4|CAO03602.1| 247|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BX293995-3|CAH70538.1| 291|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BX293995-2|CAO03601.1| 292|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BX293995-1|CAH70537.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BC006540-1|AAH06540.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
BC002999-1|AAH02999.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
AY438030-1|AAR30498.1| 316|Homo sapiens BRCA1/BRCA2-containing ... 35 0.23
U77782-1|AAB71624.1| 1236|Homo sapiens N-methyl-D-aspartate rece... 31 4.9
L76224-1|AAA88096.1| 1233|Homo sapiens NMDA receptor protein. 31 4.9
BC041128-1|AAH41128.1| 907|Homo sapiens Similar to glutamate re... 31 4.9
U46838-1|AAC50766.1| 821|Homo sapiens p105MCM protein. 30 8.6
D84557-1|BAA12699.1| 821|Homo sapiens HsMcm6 protein. 30 8.6
BC032374-1|AAH32374.1| 821|Homo sapiens minichromosome maintena... 30 8.6
AY220757-1|AAO26043.1| 821|Homo sapiens MCM6 minichromosome mai... 30 8.6
AC011893-4|AAX88925.1| 785|Homo sapiens unknown protein. 30 8.6
>X64643-1|CAA45917.1| 291|Homo sapiens C6.1A protein.
Length = 291
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>S72931-1|AAB30469.2| 363|Homo sapiens T-cell receptor alpha
chain-c6.1A fusion protein protein.
Length = 363
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 58 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 88
>S68015-1|AAB29005.2| 321|Homo sapiens c6.1A protein.
Length = 321
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 107 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 137
>BX470111-6|CAO03576.1| 247|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 247
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>BX470111-5|CAI41654.1| 291|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 291
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>BX470111-4|CAO03575.1| 292|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 292
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 103 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 133
>BX470111-3|CAI41655.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 316
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>BX470111-2|CAO03574.1| 226|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 226
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 78 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 108
>BX470111-1|CAO03573.1| 90|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 90
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 44 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 74
>BX293995-4|CAO03602.1| 247|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 247
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>BX293995-3|CAH70538.1| 291|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 291
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>BX293995-2|CAO03601.1| 292|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 292
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 103 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 133
>BX293995-1|CAH70537.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 316
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>BC006540-1|AAH06540.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 316
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>BC002999-1|AAH02999.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 316
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>AY438030-1|AAR30498.1| 316|Homo sapiens BRCA1/BRCA2-containing
complex subunit 36 protein.
Length = 316
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 545 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 637
+ R A TGRP+RVV W H H +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132
>U77782-1|AAB71624.1| 1236|Homo sapiens N-methyl-D-aspartate
receptor 2C subunit precursor protein.
Length = 1236
Score = 30.7 bits (66), Expect = 4.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 517 SRELFPPRPVLNFTWGGCDW*TS*GGYLVTP 609
+RE F R +LN TW G D+ S GGYLV P
Sbjct: 327 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 356
>L76224-1|AAA88096.1| 1233|Homo sapiens NMDA receptor protein.
Length = 1233
Score = 30.7 bits (66), Expect = 4.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 517 SRELFPPRPVLNFTWGGCDW*TS*GGYLVTP 609
+RE F R +LN TW G D+ S GGYLV P
Sbjct: 327 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 356
>BC041128-1|AAH41128.1| 907|Homo sapiens Similar to glutamate
receptor, ionotropic, N-methyl D-aspartate 2C protein.
Length = 907
Score = 30.7 bits (66), Expect = 4.9
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 517 SRELFPPRPVLNFTWGGCDW*TS*GGYLVTP 609
+RE F R +LN TW G D+ S GGYLV P
Sbjct: 361 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 390
>U46838-1|AAC50766.1| 821|Homo sapiens p105MCM protein.
Length = 821
Score = 29.9 bits (64), Expect = 8.6
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 579 LPVATAPREVEDRTRWKQLTRGQGQVLRTRPSVMKKATKKMLCLKQDCGTILSRFMFIFK 400
LP RE+ +R LTR GQV+RT P + + LCL DC T++ FK
Sbjct: 117 LPTRHKIRELTS-SRIGLLTRISGQVVRTHPVHPELVSGTFLCL--DCQTVIRDVEQQFK 173
Query: 399 KNISNV 382
N+
Sbjct: 174 YTQPNI 179
>D84557-1|BAA12699.1| 821|Homo sapiens HsMcm6 protein.
Length = 821
Score = 29.9 bits (64), Expect = 8.6
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 579 LPVATAPREVEDRTRWKQLTRGQGQVLRTRPSVMKKATKKMLCLKQDCGTILSRFMFIFK 400
LP RE+ +R LTR GQV+RT P + + LCL DC T++ FK
Sbjct: 117 LPTRHKIRELTS-SRIGLLTRISGQVVRTHPVHPELVSGTFLCL--DCQTVIRDVEQQFK 173
Query: 399 KNISNV 382
N+
Sbjct: 174 YTQPNI 179
>BC032374-1|AAH32374.1| 821|Homo sapiens minichromosome maintenance
complex component 6 protein.
Length = 821
Score = 29.9 bits (64), Expect = 8.6
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 579 LPVATAPREVEDRTRWKQLTRGQGQVLRTRPSVMKKATKKMLCLKQDCGTILSRFMFIFK 400
LP RE+ +R LTR GQV+RT P + + LCL DC T++ FK
Sbjct: 117 LPTRHKIRELTS-SRIGLLTRISGQVVRTHPVHPELVSGTFLCL--DCQTVIRDVEQQFK 173
Query: 399 KNISNV 382
N+
Sbjct: 174 YTQPNI 179
>AY220757-1|AAO26043.1| 821|Homo sapiens MCM6 minichromosome
maintenance deficient 6 (MIS5 homolog, S. pombe) (S.
cerevi protein.
Length = 821
Score = 29.9 bits (64), Expect = 8.6
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 579 LPVATAPREVEDRTRWKQLTRGQGQVLRTRPSVMKKATKKMLCLKQDCGTILSRFMFIFK 400
LP RE+ +R LTR GQV+RT P + + LCL DC T++ FK
Sbjct: 117 LPTRHKIRELTS-SRIGLLTRISGQVVRTHPVHPELVSGTFLCL--DCQTVIRDVEQQFK 173
Query: 399 KNISNV 382
N+
Sbjct: 174 YTQPNI 179
>AC011893-4|AAX88925.1| 785|Homo sapiens unknown protein.
Length = 785
Score = 29.9 bits (64), Expect = 8.6
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 579 LPVATAPREVEDRTRWKQLTRGQGQVLRTRPSVMKKATKKMLCLKQDCGTILSRFMFIFK 400
LP RE+ +R LTR GQV+RT P + + LCL DC T++ FK
Sbjct: 81 LPTRHKIRELTS-SRIGLLTRISGQVVRTHPVHPELVSGTFLCL--DCQTVIRDVEQQFK 137
Query: 399 KNISNV 382
N+
Sbjct: 138 YTQPNI 143
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,788,410
Number of Sequences: 237096
Number of extensions: 1603967
Number of successful extensions: 2551
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2551
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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