Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G15
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142...    27   7.5  

>04_03_0457 +
           16113087-16113249,16113468-16113498,16114138-16114271,
           16114370-16114518,16114974-16115039,16115159-16115206,
           16115293-16115496,16115614-16115637
          Length = 272

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 160 HSYNNINNDYLYKNHLCQTINISIRNYLIMHIGDNLFKKS 41
           H     NN   YK   C  ++I   N L   IG N+F KS
Sbjct: 169 HMQQGKNNSNAYKKQQCNIVDIMDANSL--EIGTNVFLKS 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,474,122
Number of Sequences: 37544
Number of extensions: 152812
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)