Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G15
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-13|CAI58636.1|  206|Caenorhabditis elegans Hypothetical p...    29   1.3  
Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical p...    29   1.3  
Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF082012-1|AAD03024.1|  437|Caenorhabditis elegans UDP-N-acetylg...    27   5.1  

>Z93383-13|CAI58636.1|  206|Caenorhabditis elegans Hypothetical
           protein F54B8.7b protein.
          Length = 206

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 395 LVPSREYLLTLLKNKLFVCTFIIVLFVCSCSPRITVWDNISL 270
           LV +   +LT++ ++   CT I +L+   CS RI    ++S+
Sbjct: 3   LVKTASLVLTIIFSQSLCCTMIYLLYAVFCSKRIAFRPSLSI 44


>Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.7a protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 395 LVPSREYLLTLLKNKLFVCTFIIVLFVCSCSPRITVWDNISL 270
           LV +   +LT++ ++   CT I +L+   CS RI    ++S+
Sbjct: 3   LVKTASLVLTIIFSQSLCCTMIYLLYAVFCSKRIAFRPSLSI 44


>Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical
           protein C08B6.11 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 392 VPSREYLLTLLKNKLFVCTFIIVLFVCSCSPRI 294
           +PS  +LL  L     +C F I+ ++C CS RI
Sbjct: 195 IPSNNFLLPFL----LLCGFAILGYICCCSNRI 223


>U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical
           protein F21C10.12 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 181 YFFSYLIHSYNNINNDYLYKNHLCQTINISIRNYLI-MHIGDNLF 50
           +FFS  +  + +I  D+L +++    + I + N LI +HIG   F
Sbjct: 248 HFFSMALKLFESIFKDFLNRHNEYFEVMIEVSNILIVIHIGTTFF 292


>Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical
           protein M01F1.1 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 154 YNNINNDYLYKNHLCQTINISIRNYLIMHIGD 59
           ++ IN DYL KN     +++ IRN + + I D
Sbjct: 330 FSQINLDYLQKNEFESRLSLDIRNAVPVDIDD 361


>AF082012-1|AAD03024.1|  437|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 154 YNNINNDYLYKNHLCQTINISIRNYLIMHIGD 59
           ++ IN DYL KN     +++ IRN + + I D
Sbjct: 330 FSQINLDYLQKNEFESRLSLDIRNAVPVDIDD 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,012,638
Number of Sequences: 27780
Number of extensions: 167362
Number of successful extensions: 360
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)