Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G09
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   1.7  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   4.0  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   4.0  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   4.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   5.2  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   6.9  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   9.1  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  

>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -2

Query: 345 AKVSVLNYIPNQIIDCSLCSAG--FLF 271
           A++ VLN+I N +I  S CS+G  FLF
Sbjct: 328 AEIPVLNHIINAVILTSACSSGNSFLF 354


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 46  TYLRIKKLKISYFTSKLLMSSKQSYHIFYLF 138
           T + I  L  S+ TSK  +SS + YH  YLF
Sbjct: 332 TIVDIILLHQSHSTSKEWLSSLEQYHCTYLF 362


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 61  KKLKISYFTSKLLMSSKQSYHIFYL-FTPLTMS 156
           + +K  Y +SKL+   ++SY  FY+   PL +S
Sbjct: 141 RTIKAEYESSKLVQPEQKSYEEFYMAVNPLDLS 173


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 224 NPALHNFTTCDVIRGQNKKPAEHRLQ 301
           NP  H   +C+VI G+ KK  + R++
Sbjct: 242 NPLSHWIVSCNVIGGEKKKSEKARIR 267


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 375 MELSFFVLIVAKVSVLNYI-PNQIIDCSLCSAGFLF 271
           ++L  +V   +K ++ + + P  +++C LC  GFLF
Sbjct: 515 LQLLSYVPSFSKAAISHSLGPCDLMECLLCELGFLF 550


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = +3

Query: 198  SKMLRKLNR-TQPCTTSPRVTSFGVKIRSQLNIDYNQ------LFDLEYNSGHSLLRQL 353
            SK+  KL R +   ++SPR+TSFG      L+I   Q      + +LE    ++LL +L
Sbjct: 949  SKVAAKLQRESTEVSSSPRLTSFGDVEEEALSIQLLQKETMLRIDELEIERNNTLLERL 1007


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 251 CDVIRGQ-NKKPAEHRLQSII*FGI*FRTLTF 343
           C VI G  N     H+L++++ FGI F+ L F
Sbjct: 185 CGVIAGAVNSTQPAHQLKNMVIFGILFQGLGF 216


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 40 RITYLRIKKLKISYFTSK 93
          R  YLR  KL +S+F SK
Sbjct: 5  RFNYLRFNKLCVSFFRSK 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,704
Number of Sequences: 5004
Number of extensions: 36566
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)