Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G09
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.47 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.8  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   5.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 213 KLNRTQPCTTSPRVT-SFGVKIRSQLNIDYNQLFDLEYNSGHSLLRQLEQKMTIP 374
           KL ++  C  +PR+T S  +K  S  N DY+   D    + HS    ++ KM  P
Sbjct: 205 KLEQSPLCPPAPRLTNSNSIKHESD-NSDYSHTTD---ENRHSSTLDIDHKMLTP 255


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 7   NPNYYI*XRGDRITYLRIKKLKISYFTSKLLMSSK--QSYHIFYLFT 141
           +P +Y+  +     +LR KKL+  Y  S+L M     +S +I  L+T
Sbjct: 417 DPAFYMLYQNILSYFLRYKKLQPQYSQSELQMPGVKFESVNIDKLYT 463


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 260 IRGQNKKPAEHRLQSII*FGI*FRTLTFATIRTK 361
           +R  +   AE  + S + FG+ F   +F   RTK
Sbjct: 1   MRASSVLQAESDVSSCVIFGVLFVLFSFLRTRTK 34


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 260 IRGQNKKPAEHRLQSII*FGI*FRTLTFATIRTK 361
           +R  +   AE  + S + FG+ F   +F   RTK
Sbjct: 1   MRASSVLQAESDVSSCVIFGVLFVLFSFLRTRTK 34


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 227 PALHNFTTCDVIRGQNK 277
           P  H   TCDV+  Q+K
Sbjct: 56  PLRHRRVTCDVLSWQSK 72


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 7   NPNYYI*XRGDRITYLRIKKLKISYFTSKLLMSSK--QSYHIFYLFT 141
           +P +Y+  +     +LR KKL+  Y  S+L M     +S +I  L+T
Sbjct: 417 DPAFYMLYQKILSYFLRYKKLQPQYSQSELQMPGVKFESVNIDKLYT 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,818
Number of Sequences: 438
Number of extensions: 2562
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)