Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_G08
(775 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 165 2e-40
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 164 3e-40
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 164 3e-40
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 164 3e-40
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 164 3e-40
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 149 1e-35
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 138 2e-32
M87434-1|AAA60607.1| 727|Homo sapiens 71 kDa 2'5' oligoadenylat... 30 8.0
M87284-1|AAA60606.1| 687|Homo sapiens 2'5' oligoadenylate synth... 30 8.0
BC049215-1|AAH49215.1| 687|Homo sapiens 2'-5'-oligoadenylate sy... 30 8.0
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 165 bits (401), Expect = 2e-40
Identities = 87/240 (36%), Positives = 127/240 (52%), Gaps = 1/240 (0%)
Frame = -2
Query: 774 GMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFELFNETLWRTSMGQH 595
G CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 114 GQTCWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT 172
Query: 594 LDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDIC 418
LD +T + D FT R + LP++ + +A EK + +A+ I
Sbjct: 173 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL 232
Query: 417 LEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGS 238
LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T Q + K YG
Sbjct: 233 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ 292
Query: 237 SEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKLLXITYXRQ 58
E V R+K LYE+L LP ++ E+ Y +I+ IE F L Y R+
Sbjct: 293 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR 352
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 164 bits (399), Expect = 3e-40
Identities = 87/240 (36%), Positives = 127/240 (52%), Gaps = 1/240 (0%)
Frame = -2
Query: 774 GMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFELFNETLWRTSMGQH 595
G CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 107 GQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT 165
Query: 594 LDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDIC 418
LD +T + D FT R + LP++ + +A EK + +A+ I
Sbjct: 166 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL 225
Query: 417 LEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGS 238
LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T Q + K YG
Sbjct: 226 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ 285
Query: 237 SEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKLLXITYXRQ 58
E V R+K LYE+L LP ++ E+ Y +I+ IE F L Y R+
Sbjct: 286 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR 345
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 164 bits (399), Expect = 3e-40
Identities = 87/240 (36%), Positives = 127/240 (52%), Gaps = 1/240 (0%)
Frame = -2
Query: 774 GMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFELFNETLWRTSMGQH 595
G CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 181 GQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT 239
Query: 594 LDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDIC 418
LD +T + D FT R + LP++ + +A EK + +A+ I
Sbjct: 240 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL 299
Query: 417 LEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGS 238
LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T Q + K YG
Sbjct: 300 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ 359
Query: 237 SEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKLLXITYXRQ 58
E V R+K LYE+L LP ++ E+ Y +I+ IE F L Y R+
Sbjct: 360 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR 419
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 164 bits (399), Expect = 3e-40
Identities = 87/240 (36%), Positives = 127/240 (52%), Gaps = 1/240 (0%)
Frame = -2
Query: 774 GMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFELFNETLWRTSMGQH 595
G CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 180 GQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT 238
Query: 594 LDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDIC 418
LD +T + D FT R + LP++ + +A EK + +A+ I
Sbjct: 239 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL 298
Query: 417 LEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGS 238
LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T Q + K YG
Sbjct: 299 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ 358
Query: 237 SEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKLLXITYXRQ 58
E V R+K LYE+L LP ++ E+ Y +I+ IE F L Y R+
Sbjct: 359 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR 418
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 164 bits (399), Expect = 3e-40
Identities = 87/240 (36%), Positives = 127/240 (52%), Gaps = 1/240 (0%)
Frame = -2
Query: 774 GMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFELFNETLWRTSMGQH 595
G CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 180 GQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT 238
Query: 594 LDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDIC 418
LD +T + D FT R + LP++ + +A EK + +A+ I
Sbjct: 239 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL 298
Query: 417 LEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGS 238
LE+G FQIQDD++D FGD TGK+GTDIQ+ KC+WL VQ LQR T Q + K YG
Sbjct: 299 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ 358
Query: 237 SEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKLLXITYXRQ 58
E V R+K LYE+L LP ++ E+ Y +I+ IE F L Y R+
Sbjct: 359 KEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR 418
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 149 bits (360), Expect = 1e-35
Identities = 83/239 (34%), Positives = 118/239 (49%), Gaps = 1/239 (0%)
Frame = -2
Query: 774 GMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFELFNETLWRTSMGQH 595
G CWY++P VG+ A D+ L+ + ++ R P Y+ + ELF ++ ++T +GQ
Sbjct: 109 GQICWYQKPGVGLD-AIDDANLLEACIYPLLKLYCREQPYYLNLIELFLQSSYQTEIGQT 167
Query: 594 LDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDIC 418
LD +T + D FT R LP++ V EK + +A I
Sbjct: 168 LDLLTXPQGNVDLVRFTEKRYISIVKYKTALSSSYLPIAAAXXXXGIVXEKEHANAXKIL 227
Query: 417 LEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGS 238
LE+G QIQDD+++ FGD TGK+GTDIQ+ KC L VQ L R T Q + K YG
Sbjct: 228 LEMGEFSQIQDDYLELFGDPSVTGKIGTDIQDXKCNCLXVQCLXRATPEQYQILKENYGQ 287
Query: 237 SEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKLLXITYXR 61
E V R+K LYE+L LP ++ E+ Y +I+ IE F L Y R
Sbjct: 288 KEAEKVPRVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARQIYKR 346
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 138 bits (334), Expect = 2e-32
Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 1/218 (0%)
Frame = -2
Query: 774 GMPCWYRRPEVGITCAFXDSLLIHSSLFEFXXTNFRTNPNYMKMFELFNETLWRTSMGQH 595
G WY++ +G+ A D++L+ + ++ R P Y+ + ELF + ++T +GQ
Sbjct: 82 GQISWYQKLGMGLD-AINDAILLEACIYCLLKLYCREQPYYLNLMELFQQNSYQTEIGQT 140
Query: 594 LDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDIC 418
LD +T + D T R + LPV+ + ++ D+K + SA+ I
Sbjct: 141 LDLITTPQGNVDLRRCTEKRHKSVVKYKTAFYSFYLPVAAAMYMSRMDDKKEHTSAKKIL 200
Query: 417 LEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGS 238
LEI FQIQDD++D GD TG+VG D Q+ KC+WL VQ L + T Q + K Y
Sbjct: 201 LEIQEFFQIQDDYLDFSGDPSVTGRVGNDFQDNKCSWLVVQCLLQATPEQYQILKENYRQ 260
Query: 237 SEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIE 124
E V R+K LYE+L LP ++ EK Y +++ IE
Sbjct: 261 KEAEKVARVKALYEELDLPAVFLQYEKDSYSHVMGLIE 298
>M87434-1|AAA60607.1| 727|Homo sapiens 71 kDa 2'5' oligoadenylate
synthetase protein.
Length = 727
Score = 30.3 bits (65), Expect = 8.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 341 LVQIYKSANVLGWQFKRCSAVLKHNVQYSKP 249
L+ +YKS+++ G +F C VL+ N S+P
Sbjct: 506 LIDLYKSSDLPGGEFSTCFTVLQRNFIRSRP 536
>M87284-1|AAA60606.1| 687|Homo sapiens 2'5' oligoadenylate
synthetase protein.
Length = 687
Score = 30.3 bits (65), Expect = 8.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 341 LVQIYKSANVLGWQFKRCSAVLKHNVQYSKP 249
L+ +YKS+++ G +F C VL+ N S+P
Sbjct: 506 LIDLYKSSDLPGGEFSTCFTVLQRNFIRSRP 536
>BC049215-1|AAH49215.1| 687|Homo sapiens 2'-5'-oligoadenylate
synthetase 2, 69/71kDa protein.
Length = 687
Score = 30.3 bits (65), Expect = 8.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 341 LVQIYKSANVLGWQFKRCSAVLKHNVQYSKP 249
L+ +YKS+++ G +F C VL+ N S+P
Sbjct: 506 LIDLYKSSDLPGGEFSTCFTVLQRNFIRSRP 536
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,813,502
Number of Sequences: 237096
Number of extensions: 2060801
Number of successful extensions: 3884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3871
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -