Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G08
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.78 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.78 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   7.3  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   7.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.6  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 29  CXISYLIA*CCLLYVXSNNFLKXTRAASIGIFSICLIILSYI 154
           C +S L++  C      N       A ++G+FS+  I++SYI
Sbjct: 58  CDMSPLLSLVCA-DTRLNKLAVFIVAGAVGVFSVLTILISYI 98


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 240 SSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPI 112
           S EP  +  +   Y+  +      + +K  Y N I  IE IP+
Sbjct: 76  SKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKNYIINIEQIPV 118


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 174 YKHQEKAMYDNIIRQIENIPI 112
           Y +  K +Y N I  IE IP+
Sbjct: 109 YNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 174 YKHQEKAMYDNIIRQIENIPI 112
           Y +  K +Y N I  IE IP+
Sbjct: 109 YNNNYKKLYKNYIINIEQIPV 129


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 104 AASIGIFSICLIILSYI 154
           A ++G+FS   I++SYI
Sbjct: 83  AGAVGVFSSPTILISYI 99


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 387 DDFIDCFGDEIKTGKVGTDI 328
           DDF+   G  I T KVG+ +
Sbjct: 18  DDFMKALGVGIMTRKVGSSV 37


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 508 CGLVFYNSVVTIQSK*RIVCFSI 576
           CGL F + +++ Q    I+C +I
Sbjct: 655 CGLRFEDPMISFQPGDTIICINI 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,434
Number of Sequences: 438
Number of extensions: 4294
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)