Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_G07
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 63 2e-10
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 63 2e-10
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 36 0.023
U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of m... 30 1.5
U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein. 30 1.5
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 28 6.1
AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP ubiquit... 28 6.1
AL132898-8|CAB60959.1| 297|Caenorhabditis elegans Hypothetical ... 28 8.1
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = -2
Query: 747 IDNPEYTXDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQEG 571
I+NPEYT D LY + A+G DLWQVKSGTIFD+ +ITD A+ E K +
Sbjct: 289 IENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTV 348
Query: 570 EKK 562
EK+
Sbjct: 349 EKE 351
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = -2
Query: 747 IDNPEYTXDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQEG 571
I+NPEYT D LY + A+G DLWQVKSGTIFD+ +ITD A+ E K +
Sbjct: 289 IENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTV 348
Query: 570 EKK 562
EK+
Sbjct: 349 EKE 351
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -2
Query: 747 IDNPEYTXDSNLYKRDEICAVGLDLWQVKSGTIFDDFLIT---DDPAAAKERGEVIKKRQ 577
IDNP Y I AVG+++W + +FD+ LIT +D + ++ +K+++
Sbjct: 394 IDNPNYFEPKPFAGLAPITAVGIEMWTMSENILFDNILITSSEEDSSDVAKQTFYVKQKE 453
Query: 576 E 574
E
Sbjct: 454 E 454
>U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of mes
(in same operon)protein 3 protein.
Length = 393
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 117 HVPAHGARPIXKH*IVTYIN---SERNPHLHGHQYKTTDTYLLTHNMSLRIGKIRAKHTH 287
H+P +P+ + + N RNP Q K Y + ++ L++G++RAK H
Sbjct: 28 HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87
>U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein.
Length = 393
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 117 HVPAHGARPIXKH*IVTYIN---SERNPHLHGHQYKTTDTYLLTHNMSLRIGKIRAKHTH 287
H+P +P+ + + N RNP Q K Y + ++ L++G++RAK H
Sbjct: 28 HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +1
Query: 259 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 426
+V P+ RT+ TN+N I V A R F+R + T S+ +W SL N
Sbjct: 857 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 916
Query: 427 SLQLIV 444
LQ ++
Sbjct: 917 DLQCLI 922
>AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP
ubiquitin-protein ligase protein.
Length = 655
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +1
Query: 259 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 426
+V P+ RT+ TN+N I V A R F+R + T S+ +W SL N
Sbjct: 445 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 504
Query: 427 SLQLIV 444
LQ ++
Sbjct: 505 DLQCLI 510
>AL132898-8|CAB60959.1| 297|Caenorhabditis elegans Hypothetical
protein Y59A8B.11 protein.
Length = 297
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -3
Query: 401 DIEYLGVRSVRAWRILLLKPLIAQSSTIPILLSFVFSTVRVFGSNF 264
D YL V R +LLK + +S I F VRVF NF
Sbjct: 221 DTAYLSVADAVKIRDILLKSTVFESGIITSRNIFSVGVVRVFNPNF 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,978,988
Number of Sequences: 27780
Number of extensions: 274305
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -