Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G06
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    30   0.38 
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   1.5  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   2.7  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   6.2  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.2  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 526 KDKYCSFRFAVSNLMQAMNTTAPYFFASGSDSKNVLLILATTFPGISSTALNTLRTLSN 702
           +D + SF  + S +  A  + A    A  SD+     + +TTFP    +   T  TLSN
Sbjct: 183 EDPFASFNSSASAIAAASKSAAASASALSSDTGRSATMNSTTFPTAMKSQSTTKPTLSN 241


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 362 MKLKPKLLEKSYQELELNFRLYTRALVGLACNLHRGRELRSLFIDLLERC 213
           M  K  +++ +Y +L    R  T+ L  L   LH     R+LF++L +RC
Sbjct: 585 MAAKQSMIDSAYTQL----RESTKKLSDLREQLHVSETQRTLFLELRQRC 630


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 692 VRRVFKAVEEMPGNVVANIRSTFLLSDPLAKKYGAVVF 579
           VR +F ++ ++  ++      TF  SDP  KKY A  F
Sbjct: 214 VRGLFYSISQLRDSMTYLYDYTFYFSDPSPKKYAADAF 251


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 117 LXHVHLKRAVLVGRQELRQVR 179
           L HVHLK  ++VG+++ + V+
Sbjct: 722 LIHVHLKAPIMVGKRKTQDVQ 742


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 542 LQYL--SFNDFYHCAQA--IMGSWTYCCTGPEYYD 450
           L YL  SFN +YH A+   ++G +  C   P+  D
Sbjct: 470 LNYLNKSFNSYYHAARCFLLLGQFLSCLPAPKVDD 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,742
Number of Sequences: 5004
Number of extensions: 46935
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)