Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_G06
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0493 + 21402536-21404599 31 1.2
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 30 1.6
06_03_1084 + 27483276-27483492,27483991-27484121,27484685-274847... 30 2.1
03_05_0931 - 28912700-28913056,28913245-28913319,28913424-289134... 29 3.7
03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047 29 4.9
03_02_0827 + 11582974-11583027,11583210-11584358 28 6.5
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 28 6.5
02_04_0553 - 23808328-23809530 28 6.5
10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942 28 8.6
03_02_0340 + 7635354-7635621,7635992-7636121,7636865-7636929,763... 28 8.6
>06_03_0493 + 21402536-21404599
Length = 687
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -3
Query: 344 LLEKSYQELELNFRLYTRALVGLACNLHRGRELRSLFIDLLERCVEP 204
L E + LEL+ LY + GL CN+H+ E +SL + E +EP
Sbjct: 421 LSEMKNKGLELDISLYGALIQGL-CNVHKLDEAKSLLTKMDESGLEP 466
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 214 AWSRCGWAGGLARTWRSSCRP----TSTARFKWTCXREAD 107
A SRCG G +R WR RP TS A+ K T R D
Sbjct: 2 AASRCGGGGRASRVWRRRSRPDGAITSMAKRKGTFLRGGD 41
>06_03_1084 +
27483276-27483492,27483991-27484121,27484685-27484740,
27484834-27484891,27484970-27485113,27485270-27485353,
27485434-27485514,27485776-27485889,27486196-27486281,
27486376-27486436,27487343-27487525,27487987-27488038,
27488080-27488135,27488197-27488258,27488498-27488581,
27488899-27489030,27490220-27490316
Length = 565
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 297 HARACGARLQPAPRPGAPVSL 235
H AC R +PAPRP +PV++
Sbjct: 48 HEVACCVRTEPAPRPASPVAV 68
>03_05_0931 -
28912700-28913056,28913245-28913319,28913424-28913497,
28913604-28913691,28913785-28913936,28914050-28914209,
28914303-28914458,28914566-28914784,28915390-28915650,
28917183-28917389,28917488-28917619
Length = 626
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 645 RQYKKHILAVRPAREEVRGGGVHSLHEVRDGETE 544
R ++K +RPAREE GV S+ ++ E E
Sbjct: 296 RSFRKATAVLRPAREEALSSGVLSIATIKKTEEE 329
>03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047
Length = 368
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 510 LRPGHNGQLDVLLHRTGVLRHGDGPRVPARAARAEDPVGQGEG 382
+RP H G+ R+G + G GP P +R + VG GEG
Sbjct: 170 MRPEHEGRNSARTARSGAVEFGSGP--PLAGSRLDARVG-GEG 209
>03_02_0827 + 11582974-11583027,11583210-11584358
Length = 400
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 36 SSLGPLVSKH*LMTRIYRSQTFFKSASLXHVHLKRAVLVGRQELRQVRARPPA 194
SSL ++H L+ I + + +L H + + +GR ++R+ R +P A
Sbjct: 261 SSLIAAATRHYLLREIVKEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLA 313
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 570 HEVRDGETEAAIFILQRFLSLRPGHNGQLDVLL 472
HE+ DG + A + L R+LS+ P + L + L
Sbjct: 660 HELADGTLQRAAYFLDRYLSVTPESDDALQLRL 692
>02_04_0553 - 23808328-23809530
Length = 400
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 570 HEVRDGETEAAIFILQRFLSLRPGHNGQLDVLL 472
HE+ DG + A + L R+LS+ P + L + L
Sbjct: 202 HELADGTLQRAAYFLDRYLSVTPESDDALQLRL 234
>10_08_0653 + 19606476-19606752,19607210-19608436,19614698-19614942
Length = 582
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 459 VLRHGDGPRVPARAARAEDPVGQGEGAQAFDMHEVKA*IAGEVVSG 322
V+R G+G V AR+ ED VG+G D + GEV G
Sbjct: 49 VVRGGEGGGVDARSGEGEDEVGRGGVGVGVDTRGSEG--GGEVARG 92
>03_02_0340 +
7635354-7635621,7635992-7636121,7636865-7636929,
7637255-7637529,7640204-7640441,7641095-7641228,
7641340-7641414,7641675-7641776,7642154-7642263,
7642334-7642430
Length = 497
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 576 YEHHRPVLLRERVGQQECASYIGDHVSGHLFHCLEHST 689
Y+ +R V +R+ Q E +H+ GH FH L H T
Sbjct: 425 YDMNRMVKIRDPEQQLEMVGVPEEHIEGHAFH-LYHLT 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,852,064
Number of Sequences: 37544
Number of extensions: 396287
Number of successful extensions: 1332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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