Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G06
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 24  NTRFSSLGPLVSKH*---LMTRIYRSQTFFKSASLXHVH 131
           ++R S LGP+ S      ++ RI+R  T+F +    +VH
Sbjct: 95  DSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVH 133


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 172 WRSSCRPTSTARFKWTCXREADLKNVWERYMRVISQCLLTN 50
           W S       A  +WTC +   L  + E +M ++   +L N
Sbjct: 473 WNSWMPSIRGAIQQWTCRQPEPLIELIEHWMPLLPNWILEN 513


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 534 ILQLPFRRLEPHAGYEHHRPVLLRERVGQQECASYIGD 647
           IL L   R+    G+E  R   LRE   Q     +IG+
Sbjct: 846 ILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGN 883


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 483 PAAHYGLGAMIEIV 524
           P+ HY + AM+EIV
Sbjct: 262 PSDHYQVKAMVEIV 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,903
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)