Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G05
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    29   4.8  
01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229           29   4.8  
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171...    28   8.4  
03_05_1157 + 30816143-30816359,30817005-30817120                       28   8.4  

>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 488 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 390
           Q K+   + LP  + SL +   G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202


>01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229
          Length = 265

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 174 RVYWSCKSRRHGCAAKALTYNGKLVSHKLHH 82
           RV W    R  G +   L  NGK+  HK+H+
Sbjct: 185 RVPWEAHGRFDGASEYKLDKNGKIYEHKVHN 215


>04_01_0148 +
           1710369-1710531,1711821-1712279,1712769-1712915,
           1713004-1714170,1714378-1714430
          Length = 662

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 34  FNSCMLGYERIVWS--VVMVEFMTDQLPIVSKCF 129
           F++C L  +  V+S  V++VE +T + PI+  CF
Sbjct: 506 FHTCQLTEKSDVYSFGVILVEILTRKKPIIVNCF 539


>03_05_1157 + 30816143-30816359,30817005-30817120
          Length = 110

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 412 IVIPHTLINKLWFHFGSDSIVLIFVW 489
           ++IPH  +NK  FH  S +++LIF+W
Sbjct: 85  LIIPHDTLNKGKFHKRS-NLLLIFLW 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,966,549
Number of Sequences: 37544
Number of extensions: 404609
Number of successful extensions: 1150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)