Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G05
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      41   2e-05
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          40   2e-05
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = -1

Query: 867 LLQFMYQGEVXVKQEELASFISTAEQXQVKGLT 769
           L++F+Y GEV V Q  L+SF+ TAE  +V GLT
Sbjct: 84  LVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = -1

Query: 867 LLQFMYQGEVXVKQEELASFISTAEQXQVKGL 772
           +++F+Y+GE+ V Q EL S + TA+Q ++KGL
Sbjct: 89  IIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 313 NINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLI 435
           N  +S  R  +++  H   ++  +SF IV   +I+I  TL+
Sbjct: 388 NSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLV 428


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 120  TYNGKLVSHKLHHNHTPHDPFVTQHARIERXIEMYLYP 7
            T+    V+H+L  +  PH P +T  A     + M + P
Sbjct: 1351 TFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMKVRP 1388


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 749 LSSF*LPVKPLT*XCSAVLINDANSSCLTXTSP 847
           LSS      P+T   S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = +2

Query: 686 CLCCDDL-GPG 715
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,641
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)